PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678440519
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 717aa    MW: 79360.7 Da    PI: 8.81
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678440519genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07609658147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++++ E e lv+av++lG+g+W+ +  +      +Rt  ++k++w ++
        678440519 609 RRPFSAAEVEALVEAVEKLGTGRWRDVKMRAFenaDHRTYVDLKDKWKTL 658
                      6799**********************97666679*9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.17E-7434521IPR029071Ubiquitin-related domain
PROSITE profilePS5129417.035604663IPR017930Myb domain
SMARTSM007174.2E-8608661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-10609659IPR009057Homeodomain-like
SuperFamilySSF466891.33E-15610690IPR009057Homeodomain-like
CDDcd116603.16E-17610660No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MRTSGINWGG EQGAASGSSK WSNRLLVRTP MAIPIHSYPQ KLDSIFETGY TGGTLMVYKK  60
KLEFPFSCYR TPVVPRAPRS IRVTFFVLMF LVFLSHFIND GISPQRKKSG EVQTLCAFEL  120
LASVAGKLLE ESEGSSSSHA TEVKVMPQDE NQKEIPNIVE CKNVDRGCCN ESVFDSETSI  180
QEDNPLPNNK AVHESDHDHS NSHKSSSTSE KLDCDMKLGA RENSLKDSDI SCGRSPLSID  240
ERLHLKEYVK DHTGDLSVAN VLTVKDPLEG SANTSSHVNS ESSVKLRLHK EPFPCGLLQS  300
HWDDVKVGIR DDDENFSGSN KDSTRRTFRP QSRIGHCRVR KIMTSRYWKA APKLKGCGGV  360
YTTTTSGEGI NLFYRCRKSV CARERSQEAP VKKRRVSDHI GVAYDCQDNS NSISSIPGIA  420
ADGTSALMKA RSKSREHQVA VSIKSFKVPE LYFEVPENAT VGSLKRAVLE AVTAVLGQGI  480
RVGIVFQGKS VRDDNRTLLQ AGISQCSNLD NLGFTLEPSI GHISENPKPE HVSLLRDSDI  540
IKQDSDASKE LAPSFPSRRA AGDADKTLDG AVPRFMALSP VSVMKADALA AVPLNQKPKR  600
SELAQRRTRR PFSAAEVEAL VEAVEKLGTG RWRDVKMRAF ENADHRTYVD LKDKWKTLVH  660
TASISPQQRR GEPVPHELLD RVLSVHSYWS HHQSKHGKLQ ALELPRITDL QEAAVVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-565936961104Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678440519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077209.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077212.10.0telomere repeat-binding protein 3 isoform X1
RefseqXP_011077213.10.0telomere repeat-binding protein 3 isoform X1
TrEMBLA0A2G9G5Y60.0A0A2G9G5Y6_9LAMI; Uncharacterized protein
STRINGMigut.F00779.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20931729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-93TRF-like 2