PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678440121

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 436aa MW: 48948.2 Da PI: 8.327

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678440121	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.2e-11	146	190	2	46
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 ++ k+ +r+++NReAAr+sR RKk ++++Le + Le+ ++Lk 678440121 146 RSQKALKRLAQNREAARKSRMRKKVYVQQLESSCMRLEELEQELK 190 78899********************************99998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.2E-6	145	207	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.8E-8	146	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	147	191	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.5E-8	149	191	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.8E-10	150	191	No hit	No description
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.8E-27	228	300	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MQRVSASPPR GMSLNKNSDF DSQTPSPFHQ RCRSEETRNR TCFEDIGGSA YQGTMCSGAK 60 AADVSFDSTE YQSSAPRFNN GLVSAQMLSS GFDTSGRIRS FGKRVDSKVV ADTGHQTDAD 120 DKSQGVACHG SIYVPDSFNQ TKGADRSQKA LKRLAQNREA ARKSRMRKKV YVQQLESSCM 180 RLEELEQELK TARPQSFMLS RNVDNSVTGN VFDLSYATWS DEHSRLIGNL RRALKSQSTE 240 SQLRLALECV MSHYDELFHL KSIGAKYDVF HMLSGMWKTP AERCFMWLGG FRCSEILKII 300 GKEIEPLTEQ QLVGMCDLQQ SSHQAEDALS QGMEALQQSI METLSSTLDS HSGLSTSGSV 360 VSYMEQMATA MSKLAILESF LHQADLLRQQ TLHRLQRILT THQAARALVA ISDYRSRLLA 420 SSFLWLRRSD LWDRQP

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MQRVSASPPR GMSLNKNSDF DSQTPSPFHQ RCRSEETRNR TCFEDIGGSA YQGTMCSGAK  60
AADVSFDSTE YQSSAPRFNN GLVSAQMLSS GFDTSGRIRS FGKRVDSKVV ADTGHQTDAD  120
DKSQGVACHG SIYVPDSFNQ TKGADRSQKA LKRLAQNREA ARKSRMRKKV YVQQLESSCM  180
RLEELEQELK TARPQSFMLS RNVDNSVTGN VFDLSYATWS DEHSRLIGNL RRALKSQSTE  240
SQLRLALECV MSHYDELFHL KSIGAKYDVF HMLSGMWKTP AERCFMWLGG FRCSEILKII  300
GKEIEPLTEQ QLVGMCDLQQ SSHQAEDALS QGMEALQQSI METLSSTLDS HSGLSTSGSV  360
VSYMEQMATA MSKLAILESF LHQADLLRQQ TLHRLQRILT THQAARALVA ISDYRSRLLA  420
SSFLWLRRSD LWDRQP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678440121

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077152.1	1e-140	transcription factor HBP-1b(c38)-like
Swissprot	Q6IVC3	1e-115	TGA22_ORYSJ; Transcription factor TGA2.2
TrEMBL	B9HJ06	1e-133	B9HJ06_POPTR; Uncharacterized protein
STRING	POPTR_0008s11710.1	1e-134	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-106	bZIP family protein

Publications ? help Back to Top
Chern M,Fitzgerald HA,Canlas PE,Navarre DA,Ronald PC Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light. Mol. Plant Microbe Interact., 2005. 18(6): p. 511-20 [PMID:15986920] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]