PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678439972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | WOX | ||||||||
Protein Properties | Length: 240aa MW: 26978.3 Da PI: 8.8527 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.8e-18 | 38 | 97 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+++t+eql+ Le+l++ +psa++++++ kl +++ ++V++WFqN++a+ek+ 678439972 38 ARWSPTPEQLQFLEDLYRHgITTPSADQIRHIVGKLrrfgRIEGKNVFYWFQNHKAREKQ 97 6*****************98**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 106.5 | 1.7e-34 | 37 | 99 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+PtpeQ++ Le+ly++G+ tP++++i++i +L+++G+ie+kNVfyWFQN+kaRe+q++ 678439972 37 AARWSPTPEQLQFLEDLYRHGITTPSADQIRHIVGKLRRFGRIEGKNVFYWFQNHKAREKQRK 99 58***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 5.7E-4 | 35 | 102 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 38 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-11 | 38 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.31E-5 | 39 | 99 | No hit | No description |
PROSITE profile | PS50071 | 9.75 | 39 | 98 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 39 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGGGHKEAAS TALHDACGWD HRRSSTAAAR GSGGLVAARW SPTPEQLQFL EDLYRHGITT 60 PSADQIRHIV GKLRRFGRIE GKNVFYWFQN HKAREKQRKR RRLEFLLHHQ GSHQFPTASF 120 AQSLGTLPFK YPVPASMDDL IKTAESSAPS WPLDLESSSF MFTKSFSAQK VFGCENGNSF 180 EFESCSDNSG EVKDTQTLDL FPTKKLVLIP ADGKEEGESL LRTARLQPSQ FFEFLPTREI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 101 | RKRRR |
2 | 98 | 102 | KRRRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678439972 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 6e-31 | WUSCHEL related homeobox 1 |