PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678434062 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GATA | ||||||||
Protein Properties | Length: 260aa MW: 28292.3 Da PI: 5.6622 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.7e-18 | 171 | 205 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l 678434062 171 CLHCGSETTPQWRAGPLGPKTLCNACGVRYKSGRL 205 99*****************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.8E-16 | 165 | 219 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.914 | 165 | 201 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.04E-15 | 166 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.7E-14 | 168 | 203 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.82E-14 | 170 | 218 | No hit | No description |
Pfam | PF00320 | 1.1E-15 | 171 | 205 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 171 | 196 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MKDWSELPEV PFLAAAEEEE LINFDFDFES LIKLSSSSSA SADVTDSLGC GFTSPEGIVE 60 EELEWLSNKD AFPAIESCFG ILSDNPELIL THRSPDTVLR DSNSNTNSTT LVTSCSGTDG 120 SRVPPNPVRH RSTSRRKPRT DFRAFSVDQS SKSTVENTTQ SPETKTTGRS CLHCGSETTP 180 QWRAGPLGPK TLCNACGVRY KSGRLLPEYR PANSPTFSSA LHSNSHRKVV EMRKMKQLGE 240 EGGSSGSGSA SIYSIYHLSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 138 | RHRSTSRRKPR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678434062 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012829205.1 | 8e-64 | PREDICTED: GATA transcription factor 1-like | ||||
TrEMBL | A0A022RUZ3 | 2e-62 | A0A022RUZ3_ERYGU; Uncharacterized protein | ||||
STRING | Migut.G00615.1.p | 3e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4076 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-39 | GATA transcription factor 1 |