PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678425666

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 320aa MW: 37254.6 Da PI: 7.1397

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678425666	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.3e-53	27	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeelv++yL+ kv + + + ++e+d++++ePw+Lp ++k +e+ewyfFs rd+ky+tg r+nrat++gyWkatgkd+ev+s +g++v 678425666 27 LPPGFRFHPTDEELVTFYLASKVFSPRDHGLIDFAEIDLNRCEPWELPDAAKMGEREWYFFSFRDRKYPTGLRTNRATEAGYWKATGKDREVFS-GGSVV 125 79*********************99888788***********8888999***********************************.99* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfy+grap+gekt+Wvmheyrl 678425666 126 GIKKTLVFYRGRAPRGEKTKWVMHEYRL 153 **************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.15E-59	20	163	IPR003441	NAC domain
PROSITE profile	PS51005	56.218	27	207	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	28	153	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-59	195	206	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MLPVEDILCE LKTEDDEDAV QRWGLHLPPG FRFHPTDEEL VTFYLASKVF SPRDHGLIDF 60 AEIDLNRCEP WELPDAAKMG EREWYFFSFR DRKYPTGLRT NRATEAGYWK ATGKDREVFS 120 GGSVVGIKKT LVFYRGRAPR GEKTKWVMHE YRLDGDLSCR HIAKVRAHTL ITLNLLKLIQ 180 KETSKLSFVL FCLVWQEEWV ICRVFNRSCN KRRSYLQGET QQEQRYPQSF QTLNPFLMQQ 240 AQYSDMKTLM PPSTVLSAPF GDKWCKKEAD FEPRLKLLPQ GFIGLEWEEQ FIIPNPNPFG 300 LGGDDNSHRV VAVEKEAMTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	25	153	15	142	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	25	153	15	142	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	25	153	15	142	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	25	153	15	142	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	25	153	18	145	NAC domain-containing protein 19
3swm_B	2e-47	25	153	18	145	NAC domain-containing protein 19
3swm_C	2e-47	25	153	18	145	NAC domain-containing protein 19
3swm_D	2e-47	25	153	18	145	NAC domain-containing protein 19
3swp_A	2e-47	25	153	18	145	NAC domain-containing protein 19
3swp_B	2e-47	25	153	18	145	NAC domain-containing protein 19
3swp_C	2e-47	25	153	18	145	NAC domain-containing protein 19
3swp_D	2e-47	25	153	18	145	NAC domain-containing protein 19
4dul_A	2e-47	25	153	15	142	NAC domain-containing protein 19
4dul_B	2e-47	25	153	15	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678425666

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020535450.1	5e-90	protein CUP-SHAPED COTYLEDON 3 isoform X1
Refseq	XP_020535451.1	5e-90	protein CUP-SHAPED COTYLEDON 3 isoform X1
Swissprot	Q9S851	1e-79	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2I4HPT4	2e-86	A0A2I4HPT4_JUGRE; protein CUP-SHAPED COTYLEDON 3-like
STRING	XP_010266268.1	8e-86	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	4e-82	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]