PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678425438

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

YABBY

Protein Properties

Length: 393aa MW: 43247.5 Da PI: 9.9999

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678425438	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	137.8	1.2e-42	287	356	101	170
YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +e+p++p v+rPPekrqrvPsaynrfik+eiqrikasnPdishreafsaaaknWahfP+ihfgl 678425438 287 IRFRGIDEMPKPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKASNPDISHREAFSAAAKNWAHFPHIHFGL 356 45566789*999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-39	292	356	IPR006780	YABBY protein
SuperFamily	SSF47095	7.59E-8	299	349	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.3E-4	305	348	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MRGESKGRGL DHAAKASEAQ MGRGSTVTSH PPSSSFPAYS GRVVPLESAT TFSLPPSDAG 60 DSAAPGIGNE SPPPRRMWMD RDEEAERCNR VVMRHMERSF SGLAPPTSAA SAPPFPTLSL 120 ALNFIPFLSH VYTPSNTPPL SIPKFLNYQL LREQPLLRIV NVVFWHWLSI SGMDRAVRVP 180 GFVSSKECLL LLLVSPRTIS TNPSPPSLPR SSAMSTATCA TPSSRYPPLQ FMHPVVYSTV 240 QVPGLLNIVN AANLSHPFFS AHSILEELRN TSVNQLIQQT LPSDTLIRFR GIDEMPKPPV 300 VNRPPEKRQR VPSAYNRFIK DEIQRIKASN PDISHREAFS AAAKNWAHFP HIHFGLMPEQ 360 PLKRPSLYQQ EGDGVVMKEA LLAPTANVGV SPY

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MRGESKGRGL DHAAKASEAQ MGRGSTVTSH PPSSSFPAYS GRVVPLESAT TFSLPPSDAG  60
DSAAPGIGNE SPPPRRMWMD RDEEAERCNR VVMRHMERSF SGLAPPTSAA SAPPFPTLSL  120
ALNFIPFLSH VYTPSNTPPL SIPKFLNYQL LREQPLLRIV NVVFWHWLSI SGMDRAVRVP  180
GFVSSKECLL LLLVSPRTIS TNPSPPSLPR SSAMSTATCA TPSSRYPPLQ FMHPVVYSTV  240
QVPGLLNIVN AANLSHPFFS AHSILEELRN TSVNQLIQQT LPSDTLIRFR GIDEMPKPPV  300
VNRPPEKRQR VPSAYNRFIK DEIQRIKASN PDISHREAFS AAAKNWAHFP HIHFGLMPEQ  360
PLKRPSLYQQ EGDGVVMKEA LLAPTANVGV SPY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678425438

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	8e-51	YABBY family protein