PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678423143

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 405aa MW: 42470.2 Da PI: 8.3713

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678423143	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.8	1.4e-64	190	347	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 +a+CqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpaa+rrerq ++ +++s++ +++ + s++++++s+t++s+++++++++ts 678423143 190 AAATCQDCGNQAKKDCPHRRCRTCCKSRGYDCTTHVKSTWVPAARRRERQLMAGSSQSTSGSKKPKLVGGGGG-GASQTTTTASHTSTSNTTPPRSFDTS 288 5689*******************************************988888776666655333333322.35778888889999999999999998 PP DUF702 104 s........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s lP +v+++avf+cvrv+++ddge+e+aYq+ v+igGhvfkG+LydqGle+ 678423143 289 SshqdkeaaLPGQVRAPAVFKCVRVTALDDGEDEYAYQALVKIGGHVFKGFLYDQGLES 347 889999999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.9E-60	192	346	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	193	235	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.6E-29	298	345	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MARFISCHKI DDAFYVANLF SRVVVRLHVV ATSRRLASSD SGAFADWVAS SSSSASASVS 60 TGDLSLGFNA TVTAGMWSSS AAPRHVNYGL SPEFFFVAPA EAASASAATL SFDPNAIGVG 120 VIPLLTAAPC PTTEEALNTN SSNPRGRNFL WHQQQQGQGH SSGYLKKPTN LEPSNLLQTN 180 CSPGIGCSSA AATCQDCGNQ AKKDCPHRRC RTCCKSRGYD CTTHVKSTWV PAARRRERQL 240 MAGSSQSTSG SKKPKLVGGG GGGASQTTTT ASHTSTSNTT PPRSFDTSSS HQDKEAALPG 300 QVRAPAVFKC VRVTALDDGE DEYAYQALVK IGGHVFKGFL YDQGLESRLP NISELYLGGG 360 ESRNNPTPSS APPPPQNPPV LDPSDMYAAP GACLLGGSSF SNPIN

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MARFISCHKI DDAFYVANLF SRVVVRLHVV ATSRRLASSD SGAFADWVAS SSSSASASVS  60
TGDLSLGFNA TVTAGMWSSS AAPRHVNYGL SPEFFFVAPA EAASASAATL SFDPNAIGVG  120
VIPLLTAAPC PTTEEALNTN SSNPRGRNFL WHQQQQGQGH SSGYLKKPTN LEPSNLLQTN  180
CSPGIGCSSA AATCQDCGNQ AKKDCPHRRC RTCCKSRGYD CTTHVKSTWV PAARRRERQL  240
MAGSSQSTSG SKKPKLVGGG GGGASQTTTT ASHTSTSNTT PPRSFDTSSS HQDKEAALPG  300
QVRAPAVFKC VRVTALDDGE DEYAYQALVK IGGHVFKGFL YDQGLESRLP NISELYLGGG  360
ESRNNPTPSS APPPPQNPPV LDPSDMYAAP GACLLGGSSF SNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678423143

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835509.1	1e-115	PREDICTED: uncharacterized protein LOC105956208
Swissprot	Q94CK9	1e-75	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A022R8A6	1e-121	A0A022R8A6_ERYGU; Uncharacterized protein
STRING	Migut.D00656.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	4e-71	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]