PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678417204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 202aa MW: 23167.1 Da PI: 5.0302 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.7e-19 | 12 | 65 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Lee+Fe ++++ a ++++LA++lgL rq+ +WFqNrRa+ k 678417204 12 KKRRLKPDQVRVLEEVFEVENKLEACRKQQLAEELGLHPRQIAIWFQNRRARCK 65 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.5 | 1.3e-36 | 11 | 102 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LEe Fe e+kLe rK++la+eLgl+prq+a+WFqnrRAR k+k lEk++++Lk++yd+lk++++++ +++++Lr+++ 678417204 11 EKKRRLKPDQVRVLEEVFEVENKLEACRKQQLAEELGLHPRQIAIWFQNRRARCKSKLLEKEFDSLKAKYDKLKSDHDAIFAKNQQLRNQVL 102 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.39 | 7 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-17 | 10 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-18 | 10 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.71E-14 | 12 | 67 | No hit | No description |
Pfam | PF00046 | 9.8E-17 | 12 | 65 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-18 | 12 | 65 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.7E-6 | 38 | 47 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 42 | 65 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 47 | 63 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-12 | 68 | 108 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDGESDDGRP EKKRRLKPDQ VRVLEEVFEV ENKLEACRKQ QLAEELGLHP RQIAIWFQNR 60 RARCKSKLLE KEFDSLKAKY DKLKSDHDAI FAKNQQLRNQ VLQLTQKLGN PIVAEDELTP 120 DPQTKTSSPA AAASSVRSDI IDSESSSPLE SFKPDFSDES MSFLQPLLSF PKVEPENCED 180 LQPNSCNLGF PVQYQGTWLW RF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 16 | KKRRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678417204 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071034.1 | 1e-58 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | A2X980 | 2e-35 | HOX16_ORYSI; Homeobox-leucine zipper protein HOX16 | ||||
Swissprot | Q6YWR4 | 2e-35 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A2G9HHP0 | 8e-62 | A0A2G9HHP0_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain | ||||
STRING | Migut.E00117.1.p | 2e-53 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-35 | homeobox 1 |
Publications ? help Back to Top | |||
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