PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678416134

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TALE

Protein Properties

Length: 582aa MW: 65390.6 Da PI: 8.9413

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678416134	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.4	5.8e-09	415	452	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp ++ LA+++gL+++qV++WF N R + 678416134 415 FEHflNPYPCDVDKHILARQTGLSKSQVSNWFINARVR 452 665559******************************88 PP
2	BELL	101.3	7.1e-33	279	347	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 el++++ kLl++l+eV++rY++y++q++tv+ sFeavag gsa++Y ++A+ka+SrhFr L+d i++qi 678416134 279 ELERRRKKLLQMLDEVERRYRHYCNQMRTVVMSFEAVAGDGSAAVYSAMASKAMSRHFRRLRDGIMSQI 347 899*****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.5E-34	222	345	IPR006563	POX domain
Pfam	PF07526	8.4E-37	228	343	IPR006563	POX domain
PROSITE profile	PS50071	11.872	393	456	IPR001356	Homeobox domain
SMART	SM00389	1.5E-8	396	460	IPR001356	Homeobox domain
CDD	cd00086	4.46E-11	396	457	No hit	No description
SuperFamily	SSF46689	5.99E-17	397	462	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-26	399	461	IPR009057	Homeodomain-like
Pfam	PF05920	1.5E-16	413	452	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence Send to blast
MRRVASPVLE PGRPGAGPGP PSRHLGEGFT IFCSEKETCA DRTLCKSLHK SPELICAQRT 60 HHLSLPLLHY NLQVKMSKHR TRKMDIEFKR LPAWKRWKTK WMAEQKPGSM TSLAGGFSYS 120 ESCFAGSFES TPVVFNSNAG GMSMEMVGFM SKNLQDYAAP PWSHHQGLDD PSMGCVMFSD 180 GRNGNPNQGL SLSLSSSNPS FRHCDAPSSS GFVALHPPPQ IVPERTTLRD SKYLVPAQDL 240 LNQFCGLRPE NTPKLKPKIQ VPEEDAIKKQ SLYSLDLLEL ERRRKKLLQM LDEVERRYRH 300 YCNQMRTVVM SFEAVAGDGS AAVYSAMASK AMSRHFRRLR DGIMSQIVAT KRAIGEQDVA 360 APGTTKGDTP RLRLVDQTLR QQKALHQTSF MESHPWRPQR GLPERAVTIL RAWLFEHFLN 420 PYPCDVDKHI LARQTGLSKS QVSNWFINAR VRLWKPMVEE IYLEELKESE AMTSNDTTIE 480 DPRDSEYLSS IINTHKKRKG VGAEGGPPPE FLDSLSVDGH TGFRLTLGTG AGDNPSMFFG 540 REETQMGDCQ NYSLLESENQ KPPYRDLMGA QLLHDLAGLK SL

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence Send to blast

MRRVASPVLE PGRPGAGPGP PSRHLGEGFT IFCSEKETCA DRTLCKSLHK SPELICAQRT  60
HHLSLPLLHY NLQVKMSKHR TRKMDIEFKR LPAWKRWKTK WMAEQKPGSM TSLAGGFSYS  120
ESCFAGSFES TPVVFNSNAG GMSMEMVGFM SKNLQDYAAP PWSHHQGLDD PSMGCVMFSD  180
GRNGNPNQGL SLSLSSSNPS FRHCDAPSSS GFVALHPPPQ IVPERTTLRD SKYLVPAQDL  240
LNQFCGLRPE NTPKLKPKIQ VPEEDAIKKQ SLYSLDLLEL ERRRKKLLQM LDEVERRYRH  300
YCNQMRTVVM SFEAVAGDGS AAVYSAMASK AMSRHFRRLR DGIMSQIVAT KRAIGEQDVA  360
APGTTKGDTP RLRLVDQTLR QQKALHQTSF MESHPWRPQR GLPERAVTIL RAWLFEHFLN  420
PYPCDVDKHI LARQTGLSKS QVSNWFINAR VRLWKPMVEE IYLEELKESE AMTSNDTTIE  480
DPRDSEYLSS IINTHKKRKG VGAEGGPPPE FLDSLSVDGH TGFRLTLGTG AGDNPSMFFG  540
REETQMGDCQ NYSLLESENQ KPPYRDLMGA QLLHDLAGLK SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-14	402	460	5	63	Homeobox protein Meis2
3k2a_B	1e-14	402	460	5	63	Homeobox protein Meis2
4xrm_A	1e-14	402	460	5	63	Homeobox protein Meis2
4xrm_B	1e-14	402	460	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678416134

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073138.1	1e-139	homeobox protein BEL1 homolog
Swissprot	Q38897	6e-97	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2G9HKA1	1e-151	A0A2G9HKA1_9LAMI; Transcription factor MEIS1
STRING	XP_009604673.1	1e-135	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5300	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	5e-83	TALE family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]