PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678410252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 44463.1 Da PI: 5.5492 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.5 | 4.4e-52 | 28 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v + +++ 678410252 28 LAPGFRFHPTDEELVRYYLRRKACGKPFRF-QAVAEIDVYKSEPWELAdySSLKSRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRAVRH-RNQ 125 579*************************99.88**************84347777888**************************************.899 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+kktLvf++grap+g++t+Wvmheyrl 678410252 126 NIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 155 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-62 | 26 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.658 | 28 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-28 | 30 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGQEAVVVAG VNMRLKPSRL GAPPPTSLAP GFRFHPTDEE LVRYYLRRKA CGKPFRFQAV 60 AEIDVYKSEP WELADYSSLK SRDLEWYFFS PVDRKYGNGS RLNRATGKGY WKATGKDRAV 120 RHRNQNIGMK KTLVFHSGRA PDGKRTNWVM HEYRLCDSEL ERAGVAQDAF VLCRIFQKSG 180 LGPPNGDRYA PFVEEEWDDE ALMVPNGDAE DDMANGDDAL PDAPGVELED QALTMAPPAI 240 PQPLPLMCKR EKSEDCPESS FGQTKRPRQE DPSSGQTNGS EDSTTTCQEH AGRMMTTTNK 300 FSPTLLEFPL LQPVEAKENP PTSHHFTFDS SNLEKSVPPG YLKFISNLEN EILNVSMERE 360 TLKIEVMRAQ AMINVLQSRI DLLVKENDDL RRCGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 27 | 178 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678410252 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101542.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
TrEMBL | A0A2U5FKN3 | 0.0 | A0A2U5FKN3_SALMI; NAC domain containing protein 2 | ||||
STRING | XP_009619467.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3140 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-107 | NAC domain containing protein 50 |