PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678410217 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 166aa MW: 19721.4 Da PI: 5.4266 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.4e-18 | 31 | 82 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++eq + Le++F +++++ ++++e+ A++lgL rqV vWFqNrR + + 678410217 31 RRLSEEQANLLERYFLEDPTLETDRKERYAQELGLHPRQVAVWFQNRRVRCR 82 5789**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 98.5 | 6.2e-32 | 30 | 120 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rrls+eq++lLE+ F e+ +Le++rK++ a+eLgl+prqvavWFqnrR R ++k+lE++++ L+ ++++ + e++rLe + Lre+l+e 678410217 30 NRRLSEEQANLLERYFLEDPTLETDRKERYAQELGLHPRQVAVWFQNRRVRCRNKKLEEEFANLRVRHETTVVEKCRLEMQILMLREQLRE 120 69**************9999********************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-17 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.147 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-17 | 27 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.21E-14 | 31 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-17 | 32 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.8E-15 | 32 | 82 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MNSALLSFSL CEVFEYGLRE EQGRRSSCTN RRLSEEQANL LERYFLEDPT LETDRKERYA 60 QELGLHPRQV AVWFQNRRVR CRNKKLEEEF ANLRVRHETT VVEKCRLEMQ ILMLREQLRE 120 AENEIQKLSA CAPSPPPMEE LRLLQRGFEF DDHATPAVAW DSLYCL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678410217 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783627.1 | 1e-36 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 3e-33 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A1U7WUN7 | 3e-35 | A0A1U7WUN7_NICSY; homeobox-leucine zipper protein ATHB-40-like | ||||
TrEMBL | S8C296 | 1e-35 | S8C296_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009783627.1 | 4e-36 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18550.1 | 1e-35 | homeobox protein 21 |
Publications ? help Back to Top | |||
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