PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678406662
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 374aa    MW: 41842.9 Da    PI: 7.3596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678406662genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-17132182155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  +g+WvAeIr+p     +   r +lg+f t  eAa a+++a+++++g
  678406662 132 CNYRGVRQRT-WGKWVAEIREP-----HrgSRLWLGTFSTGHEAALAYDEAARAMYG 182
                56*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-31132190No hitNo description
PfamPF008476.9E-13132182IPR001471AP2/ERF domain
PROSITE profilePS5103221.838133190IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-21133190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-31133190IPR001471AP2/ERF domain
SMARTSM003801.8E-35133196IPR001471AP2/ERF domain
PRINTSPR003671.6E-9134145IPR001471AP2/ERF domain
PRINTSPR003671.6E-9156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRRRVLSFIL SVSSHGKEGE RQLGNKRMID KERKKKLEFN QAVDENDERR TSFTTVWGMN  60
LTHQAMELAK MRKSRGRKSG TANIAETLAK WKEYNTRNDV VDSDDKKVYK APAKGSKKGC  120
MRGKGGPENA RCNYRGVRQR TWGKWVAEIR EPHRGSRLWL GTFSTGHEAA LAYDEAARAM  180
YGPGARLNFP CCSSSMDSCS TGTTSDSMKS EGLLGERGHS ADVSVIKKEV NEGCSQNVDS  240
RNPSAVNETA THQVLDEKPI KDTKEEVAEE SVPTQSTMYL HNGQHPRTLS GQHPSDVMFD  300
VDDLLAALES APPHPTHRPP EASFQEPLDA IPTESLSLPN LHDNGLDFLK PGRQEDYNTM  360
FLDLFMDLDK DMVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-17133190260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678406662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-37ERF family protein