PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678404954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 19968.5 Da PI: 6.9325 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 21 | 66 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 + y+GVr + +g+Wv+eIr+p++ ++r++lg+f tae+Aa+a++ a+ 678404954 21 PVYRGVRMRA-WGKWVSEIREPKK---KTRIWLGTFATAEMAARAHDVAA 66 68*****998.**********854...6*******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-11 | 21 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-34 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-21 | 22 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 22 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.471 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.16E-33 | 23 | 80 | No hit | No description |
PRINTS | PR00367 | 7.4E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 187 aa Download sequence Send to blast |
MGKTAAAAAG GKKGRGNSKH PVYRGVRMRA WGKWVSEIRE PKKKTRIWLG TFATAEMAAR 60 AHDVAAGAVK GKSAVLNFPD IFHLLPRPAT CSPRDVQEAA NKAAAAGPLF QTETDTENCP 120 DLEQIVDLPN LGAEDLLQGS FGYDQLPPPP AYEDSCDVGF LNLAGGQDLD GSSWNTSPQL 180 IHAAFPQ |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 14 | 84 | 5 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678404954 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012849481.1 | 1e-50 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9M080 | 2e-45 | ERF43_ARATH; Ethylene-responsive transcription factor ERF043 | ||||
TrEMBL | A0A455LAE9 | 9e-49 | A0A455LAE9_9ASPA; Dehydration-responsive element-binding DREB-like protein | ||||
STRING | Migut.J01109.1.p | 2e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32800.1 | 4e-34 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|