PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678400353

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 282aa MW: 32259.2 Da PI: 9.7348

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678400353	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152.8	1.6e-47	13	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeel+ +yLk+k+ + +++ +vi+e++++k++Pw+Lp +e+e yfFs+r+ ky++g+r+nr+t sgyWkatg dk+v+++ ++++ 678400353 13 LPPGFRFHPTDEELL-QYLKRKTMSYPMPG-SVISEFEVCKTDPWNLP---GDGEQERYFFSTREVKYPNGSRSNRTTGSGYWKATGLDKQVVCSrSNHV 107 79***********.9********9.99***********...457899******************************999857778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg kktLvfy g+ pkg ktdWvmheyrl 678400353 108 VGAKKTLVFYCGKPPKGCKTDWVMHEYRL 136 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-56	10	159	IPR003441	NAC domain
PROSITE profile	PS51005	53.607	13	159	IPR003441	NAC domain
Pfam	PF02365	8.3E-25	14	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MERAIRDGGV LRLPPGFRFH PTDEELLQYL KRKTMSYPMP GSVISEFEVC KTDPWNLPGD 60 GEQERYFFST REVKYPNGSR SNRTTGSGYW KATGLDKQVV CSRSNHVVGA KKTLVFYCGK 120 PPKGCKTDWV MHEYRLPSTC QRTPVSADEN WVLCRIFLKK RKSKNANGEA ARNLTRVAPV 180 PYDLNLVPAN SASDYSGITE LSIITQKFHW LMDHKRLSEF HHHVATISKS PVDNQIPCFS 240 MNLLVSLIIT INVVLRESQL KEEMMEKGKR GRECMCIHSK MK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	9e-53	11	164	18	173	NAC domain-containing protein 19
3swm_B	9e-53	11	164	18	173	NAC domain-containing protein 19
3swm_C	9e-53	11	164	18	173	NAC domain-containing protein 19
3swm_D	9e-53	11	164	18	173	NAC domain-containing protein 19
3swp_A	9e-53	11	164	18	173	NAC domain-containing protein 19
3swp_B	9e-53	11	164	18	173	NAC domain-containing protein 19
3swp_C	9e-53	11	164	18	173	NAC domain-containing protein 19
3swp_D	9e-53	11	164	18	173	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678400353

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086848.1	5e-92	NAC domain-containing protein 83
Swissprot	Q9FY93	5e-77	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9H1C1	2e-90	A0A2G9H1C1_9LAMI; Uncharacterized protein
STRING	XP_010090688.1	1e-83	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-79	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]