PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397060
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 343aa    MW: 37540.3 Da    PI: 7.7662
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397060genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19231264134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  678397060 231 CAHCEVTKTPQWREGPTGPKTLCNACGVRYRSGR 264
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.859225261IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-17225275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14229262IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.06E-15230277No hitNo description
SuperFamilySSF577162.52E-14230288No hitNo description
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
PfamPF003201.5E-17231264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNVVAPGSCW DSHGNGVYGD QDFDNLFSIL DFPIESLEEN EFVEEDWDIS KSQSLGPIPP  60
DVLMDPLIET DLPCLSAVPA ASVDGAPELT QVPEYIHETS ASDNFQHCST QLEIPESRIF  120
QSPSPNSVLE SSGCSNRKGS PKARGLIPVK ARSKRVRAAV NPWLALLSPL VTAATSSSVS  180
SAKRERHQRK KTMISHQPVA KESKNGTLPK ADNSLLVALE KDQPAVATKK CAHCEVTKTP  240
QWREGPTGPK TLCNACGVRY RSGRLFPEYR PAASPTFTPA LHSNSHKKVI EMRSKASHRI  300
ASFNINGPAV SPRPEFAQKC SFLFDVIQDR IHHVYESGTS TSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552412.11e-103GATA transcription factor 11-like
TrEMBLA0A2G9HBY52e-98A0A2G9HBY5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-48GATA transcription factor 11