PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678397013
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 879aa    MW: 97294.5 Da    PI: 6.8495
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678397013genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.1e-172779452
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                 ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR
  678397013 27 YVRYTPEQVEALERVYAECPKPSSQRRQQLIRECpilaNIEPKQIKVWFQNRR 79
               6789************************************************9 PP
2START145.84.2e-462154212203
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +ae +++++++ka+ ++  Wv+++ +++g+ +  +f+ s++++g a+r++ +   ++++ ve+l d++  W ++++++e+     sg  g+++l + +++
  678397013 215 IAEGTLADFLAKATGTSVDWVQMPGMKPGPGSDGIFAISQSCNGVAARVCSLISLEPTKIVEILKDRM-SWHRDCRSIEIFTMFPSGngGIIELLYIQTY 313
                67888999************************************************************.***************99999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++lvp Rdf+++Ry+ +l+ g++v++++S++ +   p+     ++vR+e++pSg+l++p+++g+s +++v+h++l+ +++++++r+l++s+++ ++kt
  678397013 314 APTTLVPaRDFWTLRYTTTLENGSLVVCERSLSGTGAGPNgasALQFVRGEMFPSGFLVRPCDGGGSIIHIVDHFNLEPWSVPEVVRPLYESSTFLAQKT 413
                *************************************999998889****************************************************** PP

                HHHHTXXX CS
      START 196 wvatlqrq 203
                ++a+lq+ 
  678397013 414 TLAALQYI 421
                ******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.7832179IPR001356Homeobox domain
SMARTSM003896.3E-102389IPR001356Homeobox domain
CDDcd000869.15E-162680No hitNo description
SuperFamilySSF466894.15E-142679IPR009057Homeodomain-like
PfamPF000465.0E-152779IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-172980IPR009057Homeodomain-like
CDDcd146862.06E-4129167No hitNo description
PROSITE profilePS5084824.701205433IPR002913START domain
SuperFamilySSF559613.71E-28213403No hitNo description
SMARTSM002342.1E-34214424IPR002913START domain
PfamPF018522.5E-43216421IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-16253412IPR023393START-like domain
PfamPF086703.6E-43733877IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MAMVAQQHIE GSGSDGSIDK HLDAGKYVRY TPEQVEALER VYAECPKPSS QRRQQLIREC  60
PILANIEPKQ IKVWFQNRRC FDSCIVYPCL LSILARATTF FKFELFIFTW VGTYIDRTVW  120
RWLFLSECRC REKQRKESIR LQGVNRKLTA MNKLLMEEND RLQKQVSQLV CENGFMRQQL  180
HTAAVPNGDA TPESVVTTKQ HSLRDTSNPA GLLSIAEGTL ADFLAKATGT SVDWVQMPGM  240
KPGPGSDGIF AISQSCNGVA ARVCSLISLE PTKIVEILKD RMSWHRDCRS IEIFTMFPSG  300
NGGIIELLYI QTYAPTTLVP ARDFWTLRYT TTLENGSLVV CERSLSGTGA GPNGASALQF  360
VRGEMFPSGF LVRPCDGGGS IIHIVDHFNL EPWSVPEVVR PLYESSTFLA QKTTLAALQY  420
IRQLAQETSG EVVYGLGRQP SVLRTFSQRL CRGFNEAVSG FNDDGWSVLK CDGNEDVVVA  480
IGTFRSPSAG SSNGVAGSRV LCAKASMLLQ NVHPAMLVQF LREHRSEWAD FSVDAYVASA  540
LKNMHVYPGM RSSRFTGSHT TMQLGHTIER EEMLEIVRLE GSFLDHGDTC VSKDIHLLQM  600
CSGIDDNAVG ACAELVYAPI DEMFPDYAVL LPSGFRVISL DPKPDSSLLH RTLDLASSPA  660
MSSSCKSSSS PACSRFILII AFQFPFESSL LENVATMARQ YVRNVMSSVQ RVAMAISPAV  720
APKLSSPSPE ALTLAHWICR SYSYHTGVEL LRSAPASSGH DGVLKALWQQ KNAILCCSMK  780
AVPVFTFANQ SGLDMLETTL LALQDVMIDK IFDESGRRAL FSEFSKIMQH GFAHLPGGIC  840
TSTMGRNASY ERAEVWKVIA EEDNDVHCLA FSFLNWCFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678397013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089294.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9HC040.0A0A2G9HC04_9LAMI; Uncharacterized protein
STRINGcassava4.1_001649m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]