PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678396413
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 103aa    MW: 11335.2 Da    PI: 10.5664
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678396413genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141868151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k i+++s+rq tf+kR +g++K   E S+LC++ + +   s+  k+ ++s+
  678396413 18 KEISDNSRRQATFTKRCKGLFKEVAECSILCGVGITIFARSPGSKIVTFST 68
               689**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-91069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.6751070IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-151170IPR002100Transcription factor, MADS-box
CDDcd002667.24E-161168No hitNo description
PRINTSPR004047.8E-111232IPR002100Transcription factor, MADS-box
PfamPF003199.3E-142066IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-113247IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-114768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MGSSVPRKTS GRCKLKIKEI SDNSRRQATF TKRCKGLFKE VAECSILCGV GITIFARSPG  60
SKIVTFSTGT TPHNPDLRCL FRGANSSFLE NRAFQVSMDV DIM
Cis-element ? help Back to Top
SourceLink
PlantRegMap678396413
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.13e-12M-type_MADS family protein