PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678393780

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C3H

Protein Properties

Length: 642aa MW: 70325.8 Da PI: 6.3114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678393780	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2.1e-06	266	287	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f++ G C++Gd C +aHg 678393780 266 VPCSDFRK-GACRRGDMCEYAHG 287 69****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	2.6E-18	6	150	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.22E-16	12	143	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.1E-11	49	123	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.618	54	124	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.23	54	84	IPR002110	Ankyrin repeat
CDD	cd00204	1.69E-13	56	129	No hit	No description
PROSITE profile	PS50088	13.037	89	124	IPR002110	Ankyrin repeat
SMART	SM00248	3.1E-4	89	121	IPR002110	Ankyrin repeat
Gene3D	G3DSA:4.10.1000.10	3.7E-5	261	288	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-6	262	288	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-4	266	287	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.99	267	289	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.6E-4	294	325	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	35	297	320	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MSTPSKEGLG FLLEVAADND IEGFKKFVER EPSSVDEAEL WYGRKKGSSE MVLQQMTPLM 60 VAATFGSIGV VKVLLSFPEV DVNRSCGVDQ STALHYAASS GTMNAVEIVK LLMEAGADPS 120 LSDSNGCCPC DVIVVSPKFP SMKSSLQRLL VPDVGALMDT PNSNSDSPPT SPCQGIESPD 180 STAFSKGLKL ADVSVTFARE KKEYPIDPLL PDIKHSIYST DEFRMFSFKV RPCSRAYSHD 240 WTECPFVHPG ENARRRDPRK FHYRCVPCSD FRKGACRRGD MCEYAHGVFE SWLHPAQYRT 300 RPCKDGTACS RRVCFFAHTQ DELRPLYLST GSGVHSPRSS SAADGVDFFA AVALPGSPSL 360 VAMMPSSLFT PPMSPSNNGM PNSGRPSQQQ NLPTLSLSGV NFQLSRLHAS RNARDVDVQL 420 QHLVSEMSRL KTANLSVHSM TPSNLDDVFP AESSSPRYPD QALPSSATAP THKSAVLNQF 480 MQHQQGMLSP IRTKFSPTNI NMEHSLLQTP SGRISRLSLP AHQEKNHHQV HGLSSRDVGS 540 HTAVFSSEET DWLRWGSPTR QPVWTTCDDS GGLKRSASSE LGDNGDEPDL SWVHSLVKES 600 SQERSASTGT ASDGSADYIE KDDQSVLDAW LEQMQLDQPM AQ

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MSTPSKEGLG FLLEVAADND IEGFKKFVER EPSSVDEAEL WYGRKKGSSE MVLQQMTPLM  60
VAATFGSIGV VKVLLSFPEV DVNRSCGVDQ STALHYAASS GTMNAVEIVK LLMEAGADPS  120
LSDSNGCCPC DVIVVSPKFP SMKSSLQRLL VPDVGALMDT PNSNSDSPPT SPCQGIESPD  180
STAFSKGLKL ADVSVTFARE KKEYPIDPLL PDIKHSIYST DEFRMFSFKV RPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK FHYRCVPCSD FRKGACRRGD MCEYAHGVFE SWLHPAQYRT  300
RPCKDGTACS RRVCFFAHTQ DELRPLYLST GSGVHSPRSS SAADGVDFFA AVALPGSPSL  360
VAMMPSSLFT PPMSPSNNGM PNSGRPSQQQ NLPTLSLSGV NFQLSRLHAS RNARDVDVQL  420
QHLVSEMSRL KTANLSVHSM TPSNLDDVFP AESSSPRYPD QALPSSATAP THKSAVLNQF  480
MQHQQGMLSP IRTKFSPTNI NMEHSLLQTP SGRISRLSLP AHQEKNHHQV HGLSSRDVGS  540
HTAVFSSEET DWLRWGSPTR QPVWTTCDDS GGLKRSASSE LGDNGDEPDL SWVHSLVKES  600
SQERSASTGT ASDGSADYIE KDDQSVLDAW LEQMQLDQPM AQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678393780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078886.1	0.0	zinc finger CCCH domain-containing protein 30-like
Refseq	XP_020549443.1	0.0	zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2G9HGR0	0.0	A0A2G9HGR0_9LAMI; CCCH-type Zn-finger protein
STRING	XP_002526718.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]