PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678386553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GRAS
Protein Properties Length: 413aa    MW: 46627.4 Da    PI: 5.8156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678386553genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS254.15.3e-78494043374
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshltaN 99 
                elL +cA a+ ++d  ++++l + l+el+sp+gd  ++la yf + L  r ++s+ ++y++l++ +++  +     +a++l   f++vsP+ +f+h+++N
  678386553  49 ELLRSCAAAMWENDSGRIHHLFWMLNELSSPYGDFEEKLAYYFFQSLFFRATDSGRRCYETLAAAAERGCT---FDSARRLilkFQDVSPWTTFGHVACN 145
                7899**********************************************************999999544...4444444456**************** PP

       GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                 a+le +eg+ ++Hi+D++ + ++QWp++l+aLa+R++++p+++iT+v   +      ++e+  r++kfA+ + vpfef+v+        +++++++  +
  678386553 146 GAMLEVLEGHPKIHIVDISDTLCTQWPTFLEALATRNDETPRVKITAVIVGS--AVSFMKEITPRMEKFARLMAVPFEFKVV-------TSVHDIEILDD 236
                ***********************************************99944..8899***********************7.......567888999** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                Ea+aVnl+  l +++  +++ +s    +++l++s++Pk+v +ve+ ad ++++  + f e+l++y+  +++l++ +p++s+ + ++E+e++ r+i  v++
  678386553 237 EAVAVNLIAGLWKFP--DGEAKS----LVNLMRSVKPKLVALVEEKADFSTPTMPKLFEECLRFYTLYLEMLNECFPPTSDLKLMLEKECF-RAIIRVLS 329
                **************9..555555....**************************************************************76.78999*** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374
                c  +e    +e+  kW++ l+ aGF++++ s+++ +++k+ll+++   +  +v   +e   l l Wk++p+v +S W+
  678386553 330 CDDQE---MKERGTKWSDFLRGAGFSTARHSNEVIEDVKALLKRYMdRWSLQVAgeDETSGLALVWKKEPVVLASIWK 404
                **999...666677********************************65656665734456677**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.01721381IPR005202Transcription factor GRAS
PfamPF035141.8E-7549404IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MSTIYANLKP CVPHHQSQAR DFHHPNKLTS SDSTSSDSAA SGDGKWAAEL LRSCAAAMWE  60
NDSGRIHHLF WMLNELSSPY GDFEEKLAYY FFQSLFFRAT DSGRRCYETL AAAAERGCTF  120
DSARRLILKF QDVSPWTTFG HVACNGAMLE VLEGHPKIHI VDISDTLCTQ WPTFLEALAT  180
RNDETPRVKI TAVIVGSAVS FMKEITPRME KFARLMAVPF EFKVVTSVHD IEILDDEAVA  240
VNLIAGLWKF PDGEAKSLVN LMRSVKPKLV ALVEEKADFS TPTMPKLFEE CLRFYTLYLE  300
MLNECFPPTS DLKLMLEKEC FRAIIRVLSC DDQEMKERGT KWSDFLRGAG FSTARHSNEV  360
IEDVKALLKR YMDRWSLQVA GEDETSGLAL VWKKEPVVLA SIWKPNCGSD SST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-1084140527420Protein SHORT-ROOT
5b3h_E1e-1084140527420Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678386553
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073835.11e-167protein SHORT-ROOT
TrEMBLA0A2G9I9V71e-161A0A2G9I9V7_9LAMI; Uncharacterized protein
STRINGPOPTR_0017s05450.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20312464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-109GRAS family protein