PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678384257

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 412aa MW: 45086.8 Da PI: 4.6976

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678384257	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	226	280	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe Fv+av++LGG ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ 678384257 226 KARMRWTPELHEIFVDAVNKLGGGEKATPKGVLKLMNVEGLTIYHVKSHLQKYRT 280 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.569	223	283	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-31	224	281	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-18	225	280	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-25	226	280	IPR006447	Myb domain, plants
Pfam	PF00249	2.3E-11	228	279	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-20	311	358	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MPPAYLIKSS STTATVEMRS SHASPKSSEG LPSVLVDSLP CLPDSGTPNC MPITNTRDSL 60 NLSSGSGDHS ELNPHELLVA NPSAALSNDQ SSLEEPNHLS QSSKQSGLDA GETFPFSWNS 120 DGIENFLHDP MSVVQNGSKN ISSSVISLED DPEKAEWSEW TEQWFTADDD INPSLSDFLG 180 DLNFPDPDSK PSDISTSKHQ KLQLPEKDQP FPSGRDCAPP TPPSAKARMR WTPELHEIFV 240 DAVNKLGGGE KATPKGVLKL MNVEGLTIYH VKSHLQKYRT ARFKPETSEG TSEKKSSAAS 300 ETTSLDAKST MGITEALKLQ MEVQKQLHEQ LEIQRNLQLR IEEQARQLQM IFEQQKKMEE 360 EKTKVSGGNH GQESPAGDEG DAAKSTAETN TQIENDRELT PPPKRAKGNN EG

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MPPAYLIKSS STTATVEMRS SHASPKSSEG LPSVLVDSLP CLPDSGTPNC MPITNTRDSL  60
NLSSGSGDHS ELNPHELLVA NPSAALSNDQ SSLEEPNHLS QSSKQSGLDA GETFPFSWNS  120
DGIENFLHDP MSVVQNGSKN ISSSVISLED DPEKAEWSEW TEQWFTADDD INPSLSDFLG  180
DLNFPDPDSK PSDISTSKHQ KLQLPEKDQP FPSGRDCAPP TPPSAKARMR WTPELHEIFV  240
DAVNKLGGGE KATPKGVLKL MNVEGLTIYH VKSHLQKYRT ARFKPETSEG TSEKKSSAAS  300
ETTSLDAKST MGITEALKLQ MEVQKQLHEQ LEIQRNLQLR IEEQARQLQM IFEQQKKMEE  360
EKTKVSGGNH GQESPAGDEG DAAKSTAETN TQIENDRELT PPPKRAKGNN EG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-30	225	284	1	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678384257

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077052.1	1e-107	protein PHR1-LIKE 1-like isoform X1
Refseq	XP_020548743.1	1e-107	protein PHR1-LIKE 1-like isoform X1
Swissprot	F4J3P7	3e-69	PHLD_ARATH; Myb family transcription factor PHL13
TrEMBL	A0A2G9HHF6	2e-99	A0A2G9HHF6_9LAMI; Uncharacterized protein
STRING	Migut.F02036.1.p	3e-95	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4582	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04450.2	3e-62	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]