PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT3G04450.2 | ||||||||
Common Name | PHL13, T27C4.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 402aa MW: 45032.4 Da PI: 6.3278 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.8 | 2.1e-32 | 198 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fvea++qLGGse+AtPk++l+l++ +gLt++hvkSHLQkYR+ AT3G04450.2 198 KQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 252 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.607 | 195 | 255 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.09E-17 | 196 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-29 | 197 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 198 | 252 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.3E-10 | 200 | 251 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-21 | 286 | 333 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MNNNPVPCQV FPLVSGGSSG GNLFSSSSGF CNGVYVSSSS QARPSVSTVP RDRITVAHVS 60 GEGQRQECPV ETHSLQLINQ PQEQKIMTWS SDQIRGFFDF PVPDPQAASS RTMVSSKEVL 120 SKCEWPDWAD QLISDDSLEP NWSELLGDPN VLNLYSKIET QSSDIARQEI VFRNQHQVDP 180 SMEPFNAKSP PASSMTSKQR MRWTPELHEA FVEAINQLGG SERATPKAVL KLINSPGLTV 240 YHVKSHLQKY RTARYKPELS KDTEEPLVKN LKTIEDIKSL DLKTSIEITE ALRLQMKVQK 300 QLHEQLEIQR SLQLQIEEQG RYLQMMIEKQ QKMQENKKDS TSSSSMPEAD PSAPSPNLSQ 360 PFLHKATNSE PSITQKLQNG SSTMDQSEST SGTSNRKRVR ED |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-28 | 198 | 256 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 258626_at | 0.0 | ||||
Expression Atlas | AT3G04450 | - | ||||
AtGenExpress | AT3G04450 | - | ||||
ATTED-II | AT3G04450 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT3G04450.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT3G04450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK118630 | 0.0 | AK118630.1 Arabidopsis thaliana At3g04450 mRNA for putative transfactor, complete cds, clone: RAFL19-89-P11. | |||
GenBank | BT005352 | 0.0 | BT005352.1 Arabidopsis thaliana At3g04445 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001189806.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_001319469.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_001326800.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | F4J3P7 | 0.0 | PHLD_ARATH; Myb family transcription factor PHL13 | ||||
TrEMBL | A0A178VHS9 | 0.0 | A0A178VHS9_ARATH; Uncharacterized protein | ||||
STRING | AT3G04450.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT3G04450.2 |
Entrez Gene | 819601 |
iHOP | AT3G04450 |
wikigenes | AT3G04450 |