PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678378414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 288aa MW: 32858.8 Da PI: 6.1835 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180 | 6.1e-56 | 11 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdeel+++yL +k+ +++++ v+ +vd++kvePwdLp k+k +ekewyfF+ +d+ky+tg+r+nrat++gyWkatgkdke+++ ++ lv 678378414 11 LPPGFRFHPTDEELITHYLSPKLVDSNFSS-IVMGDVDLNKVEPWDLPWKAKIGEKEWYFFCIKDRKYPTGSRTNRATEAGYWKATGKDKEIFR-GKVLV 108 79*************************999.89***************98999*****************************************.99*** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kktLvfykgrap+gekt+Wvmheyr+ 678378414 109 GMKKTLVFYKGRAPRGEKTNWVMHEYRV 136 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-61 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 11 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-29 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDGERDEALI LPPGFRFHPT DEELITHYLS PKLVDSNFSS IVMGDVDLNK VEPWDLPWKA 60 KIGEKEWYFF CIKDRKYPTG SRTNRATEAG YWKATGKDKE IFRGKVLVGM KKTLVFYKGR 120 APRGEKTNWV MHEYRVESMD SSHNPSSRVA NKSEWVINRV FKKGSNGKKV HISGLSESPS 180 SCSSVQPPFI DLPSTAVAEV TSFSNSQEER EMGGELSPFE GHSSCRESVF PQDQSFLTLL 240 LENYRSYARQ HGGEDGFLPE SDLSAAFADG FRPWYEQEYL ITDWITNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-53 | 9 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-53 | 9 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-53 | 9 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-53 | 9 | 169 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-53 | 9 | 169 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-53 | 9 | 169 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-53 | 9 | 169 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678378414 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027152794.1 | 1e-103 | NAC domain-containing protein 92-like | ||||
Swissprot | Q9FLR3 | 1e-89 | NAC79_ARATH; NAC domain-containing protein 79 | ||||
TrEMBL | A0A068U1T7 | 1e-100 | A0A068U1T7_COFCA; Uncharacterized protein | ||||
STRING | XP_009761662.1 | 3e-99 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 4e-89 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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