PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678377746
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37169.3 Da    PI: 9.0209
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678377746genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.68.8e-18176230256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++t+ q   Lee F ++++++  ++++LA++l+Lt rqV vWFqNrRa+ k
  678377746 176 RKKLRLTRAQSALLEESFGQQSTLNPIQKQDLARELKLTPRQVEVWFQNRRARTK 230
                788899***********************************************98 PP
2HD-ZIP_I/II114.37.5e-37176264190
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  +kk+rl++ q++lLEesF ++++L+p +K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+ +++l+een+rL++e ++L+ +
    678377746 176 RKKLRLTRAQSALLEESFGQQSTLNPIQKQDLARELKLTPRQVEVWFQNRRARTKLKQTEVDCELLKHLCESLTEENRRLQQELRDLK-A 264
                  69************************************************************************************99.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-17162230IPR009057Homeodomain-like
SuperFamilySSF466891.46E-17166233IPR009057Homeodomain-like
PROSITE profilePS5007117.054172232IPR001356Homeobox domain
SMARTSM003892.5E-15174236IPR001356Homeobox domain
PfamPF000463.4E-15176230IPR001356Homeobox domain
CDDcd000861.12E-14176233No hitNo description
PROSITE patternPS000270207230IPR017970Homeobox, conserved site
SMARTSM003404.7E-19232275IPR003106Leucine zipper, homeobox-associated
PfamPF021834.1E-8232264IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MPPVKYSKCL IEYYDEDEQH QAPGMKSSPH SSHFASPVNH SLLIIMEKAP TYKIPAPPRH  60
SSCEKDHNFR RMDFGENVLA LDLGLTFSPP ETKPKKSTPA EVLKEREPAL ALSLSGESYC  120
VFPTERSGDR KMRARGLYTQ ESVMRERLIT GGDKADKTER ISSRVSDEDD DGSNSRKKLR  180
LTRAQSALLE ESFGQQSTLN PIQKQDLARE LKLTPRQVEV WFQNRRARTK LKQTEVDCEL  240
LKHLCESLTE ENRRLQQELR DLKAIHSAQP LYVQFPVASL TMCLSCERRG PASTAAAVPE  300
TAVKSSFLIA AAPKQRLPNP SVSRVFINH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174180SRKKLRL
2224232RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678377746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099420.17e-78homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-67HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A4D8YV981e-80A0A4D8YV98_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00315.1.p4e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-68HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]