PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678367042
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 245aa    MW: 27002 Da    PI: 8.5018
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678367042genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.6e-18137187256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 ++GVr+++ +g+W+AeIrdp ++    r +lg+f+ + eAaka+++a+k+++g+
  678367042 137 LFRGVRRRS-SGKWAAEIRDPEKG---GRLWLGTFDLEIEAAKAYDRAAKRIRGH 187
                69****888.8*********8543...8*********99**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-19136195IPR016177DNA-binding domain
CDDcd000185.71E-29136196No hitNo description
PROSITE profilePS5103221.311137194IPR001471AP2/ERF domain
SMARTSM003801.1E-31137200IPR001471AP2/ERF domain
PfamPF008476.4E-12137187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-28137195IPR001471AP2/ERF domain
PRINTSPR003672.5E-10138149IPR001471AP2/ERF domain
PRINTSPR003672.5E-10176196IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVTGVVCELQ LNPPPCWASP GLAWPGVMRC DMPEPESSSV EPRLGLGGWL LQLAGCSSPL  60
RFHHNCNLKT IGVWGCCAPL SSNPLNKRTH TLELSSPAQT PRMCGESEYR VDSSSVVHEG  120
DLEAKGKRKM QRPRHSLFRG VRRRSSGKWA AEIRDPEKGG RLWLGTFDLE IEAAKAYDRA  180
AKRIRGHKAK LNFPAHVVQP GDPMLPNSEE VGQESMKQTL SKLEAFLELS PGPDPASVCP  240
WSLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-17138197363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678367042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298489.14e-26ethylene-responsive transcription factor RAP2-3
STRINGCagra.5497s0009.1.p1e-25(Capsella grandiflora)
STRINGXP_006298489.11e-25(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-26ERF family protein