PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364978
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 287aa    MW: 33065.2 Da    PI: 4.8351
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364978genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1791144356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++++eq++ Le+ Fe ++++  e++++LAk+ gL+ rqV +WFqNrRa++k
  678364978  91 KKRRLKPEQVQFLEKSFELENKLEPERKAQLAKEAGLQPRQVAIWFQNRRARYK 144
                45689************************************************9 PP
2HD-ZIP_I/II118.34.2e-3890182193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kkrrl+ eqv++LE+sFe e+kLeperK++la+e glqprqva+WFqnrRAR+ktk lEkdy+ Lk++y++lk++  +L +e+ee+r+e+k+
    678364978  90 QKKRRLKPEQVQFLEKSFELENKLEPERKAQLAKEAGLQPRQVAIWFQNRRARYKTKLLEKDYTCLKASYEKLKADYVKLFQENEEMRNEIKS 182
                  69***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8686146IPR001356Homeobox domain
SMARTSM003892.5E-1589150IPR001356Homeobox domain
SuperFamilySSF466895.13E-1890154IPR009057Homeodomain-like
CDDcd000861.40E-1590146No hitNo description
PfamPF000465.3E-1591144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1892152IPR009057Homeodomain-like
PRINTSPR000311.6E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5126142IPR000047Helix-turn-helix motif
PfamPF021834.1E-12147186IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MENVTEVYDC SASDTVFVKS ENASCDPPLW VASFQGKRSI FLLSSRDLLL LFFFFFYLKT  60
FALILRNVQQ GGDVDKMENS GEEYDGGGLQ KKRRLKPEQV QFLEKSFELE NKLEPERKAQ  120
LAKEAGLQPR QVAIWFQNRR ARYKTKLLEK DYTCLKASYE KLKADYVKLF QENEEMRNEI  180
KSLTGKAGVG EKRETKEEKS DQISPLEKAA EEVTPAAASS DVVDSDSVHC GDSEEYSQEE  240
EDETPCKVLL HHPFFPKLEL ESHDDLQPNC CNLGFPVQKQ GTWFWHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18996QKKRRLKP
29095KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071034.11e-70homeobox-leucine zipper protein HAT5-like
SwissprotQ022834e-37HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A2G9HCJ13e-79A0A2G9HCJ1_9LAMI; Transcription factor HEX
STRINGSolyc05g006980.2.12e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-39homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]