PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678364249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ARF | ||||||||
Protein Properties | Length: 901aa MW: 98717 Da PI: 5.1448 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.7 | 5.3e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD ++F ++++ +l++ 678364249 146 FCKTLTASDTSTHGGFSVPRRAAEKLfplldySMQPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAILFV--RDEKSQLLL 242 99*********************999*****9555554.49************************************************..456777899 PP EEE-S CS B3 95 kvfrk 99 +v+r+ 678364249 243 GVRRA 247 99997 PP | |||||||
2 | Auxin_resp | 117.1 | 1.5e-38 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++seFv+++++++ka+ +++s+GmRf m+fete+s++rr++Gt++g+sdldp+rWpnSkWrsL+ 678364249 272 AAHAAANRSPFTIFYNPRACSSEFVIPLARYRKAVFgTQLSIGMRFGMMFETEESNKRRYMGTITGISDLDPLRWPNSKWRSLQ 355 79********************************988*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-45 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-41 | 140 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.60E-22 | 145 | 246 | No hit | No description |
Pfam | PF02362 | 2.3E-21 | 146 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.9E-23 | 146 | 248 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.155 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-33 | 272 | 355 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.701 | 792 | 875 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.6E-8 | 811 | 870 | No hit | No description |
Pfam | PF02309 | 5.4E-6 | 836 | 875 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 901 aa Download sequence Send to blast |
MASVEEKVKP VGFVGGGSNL LEGMKLLKEM QEHTLPRKQI NSELWHACAG PLVTLPQVGS 60 LVYYFPQGHS EQVAVSTNRA ATAQIPKYPN LPPQLLCQVH NVTLHGDKDT DEIYAQISLQ 120 PVNSDKDVIP IPDFGMKPCK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPLLDYSMQ 180 PPTQELIVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDAI LFVRDEKSQL 240 LLGVRRANRQ QATLPSSVLS ADSMHIGILA AAAHAAANRS PFTIFYNPRA CSSEFVIPLA 300 RYRKAVFGTQ LSIGMRFGMM FETEESNKRR YMGTITGISD LDPLRWPNSK WRSLQVEWDE 360 PGCGDKRNRV SPWEIETPES LFIFPSLAAN MKRPFHSTFM GAPAEWDSLM SRQFLRVSDG 420 SGANFQCSAV PGMWSDQLRN ILIQPPNTLS SSAGCIAPVM QDAADSVSQE VKPLQPIGRQ 480 KMDADVFPRE ENDPATNSNV MLNGKVHRVG NHACYGTAPE LSVPESALVA EHFPTPGGSE 540 EKLQCPVSAL GNVEQNSSLS AQQACAWIEG QPGNSSQLES AGPNPLLQYP GQDDLVAGPP 600 ISDSIGVVRN AGSLCMVRKF DDHSGSSDNP YIPLPPESQE VWDAQFNSTK CTSIPAVLSQ 660 HDISNLPFSL CGLKGFNGEN NNQNDIFGYL NAEGSNSGST IIDPSVSSMV LDDFFALKKG 720 DFQSPCDYIV GNISSNQDVQ SQITSASLAD SQGFSMQEFA DNSGGASSSN VDFDDRNILQ 780 PSSWNQATPR FRTYTKIQKA GSVGRSIDVS GFKDYNELRS EIERMFGLEG LLNDLGSGWK 840 LVYVDFENDV LLVGDDPWDE FVGCVRCIRI LSPPEVKQMG EEGMQLLNSV GIQGVNGSNS 900 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 380 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678364249 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011083507.1 | 0.0 | auxin response factor 5 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A191T8S8 | 0.0 | A0A191T8S8_SALMI; Auxin response factor | ||||
STRING | Solyc04g081240.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |