PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678362210

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 342aa MW: 36200 Da PI: 6.7735

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678362210	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.7	3.5e-65	117	283	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel............kskk 82 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa rrerq+ a +++ +++++ k+++++ ++++ 678362210 117 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAVRRERQHSRAVMQHPDQRRSsgggdgntP----KDQNKTpllqvssdnnnnNITN 212 5789*********************************************99999988877766778753331....3333323333222222112233 PP DUF702 83 qsalsstklssaeskkeletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s+ +s+ a+ + +P+evs eavfrcvrv++vdd+e++l+Yqtav+i GhvfkG+LydqG+e 678362210 213 PSSNNSSVARVAT--------HmtglelgsFPPEVSLEAVFRCVRVTAVDDSEDQLGYQTAVNICGHVFKGVLYDQGVE 283 3333333333333........145555555*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	7.1E-62	119	283	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.3E-27	121	163	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.1E-25	235	282	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MADFFTLGNG VVGVGTGNAS LDQDRSAEIN PESWFLFRNE AENHHPPQHV HKGFELWPPP 60 AQAQAHNFLQ VQGGPTLHDL YASAGGLGVG RGCFSISGGG DASPRSGGFL MMRSSGGGGI 120 SCQDCGNQAK KDCAHMRCRT CCKSRGFQCQ THVKSTWVPA AVRRERQHSR AVMQHPDQRR 180 SSGGGDGNTP KDQNKTPLLQ VSSDNNNNNI TNPSSNNSSV ARVATHMTGL ELGSFPPEVS 240 LEAVFRCVRV TAVDDSEDQL GYQTAVNICG HVFKGVLYDQ GVEGETSSGG GSVTAQPLNL 300 ITGATATSTE ANGSSPFLDP CLYSAPISNF INGTQFFPPS TS

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MADFFTLGNG VVGVGTGNAS LDQDRSAEIN PESWFLFRNE AENHHPPQHV HKGFELWPPP  60
AQAQAHNFLQ VQGGPTLHDL YASAGGLGVG RGCFSISGGG DASPRSGGFL MMRSSGGGGI  120
SCQDCGNQAK KDCAHMRCRT CCKSRGFQCQ THVKSTWVPA AVRRERQHSR AVMQHPDQRR  180
SSGGGDGNTP KDQNKTPLLQ VSSDNNNNNI TNPSSNNSSV ARVATHMTGL ELGSFPPEVS  240
LEAVFRCVRV TAVDDSEDQL GYQTAVNICG HVFKGVLYDQ GVEGETSSGG GSVTAQPLNL  300
ITGATATSTE ANGSSPFLDP CLYSAPISNF INGTQFFPPS TS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678362210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-100	protein SHORT INTERNODES
Swissprot	K4B6C9	8e-79	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	S8C990	1e-109	S8C990_9LAMI; Uncharacterized protein
STRING	EOX90942	3e-87	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-66	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]