PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678361782
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 296aa    MW: 33457.6 Da    PI: 4.7883
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678361782genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd++lv+ vk+ G+++W++I ++  ++Rt+k+c++rw +
        678361782 12 KGPWKPEEDQILVNHVKRNGPRDWSSIRSKGLLNRTGKSCRLRWVN 57
                     79*************************888779***********87 PP
2Myb_DNA-binding41.92.3e-1368107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +d+ +q+G++ W++Ia ++  gRt++++k++w
        678361782  68 KFSPEEERTVIDLQAQFGNK-WARIATYLT-GRTDNDVKNFW 107
                      89******************.********9.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-21660IPR009057Homeodomain-like
PROSITE profilePS5129420.55763IPR017930Myb domain
SuperFamilySSF466892.21E-2710107IPR009057Homeodomain-like
SMARTSM007174.3E-121161IPR001005SANT/Myb domain
CDDcd001675.06E-121459No hitNo description
PfamPF139211.4E-131575No hitNo description
Gene3DG3DSA:1.10.10.606.4E-1861113IPR009057Homeodomain-like
PROSITE profilePS5129416.5964115IPR017930Myb domain
SMARTSM007172.0E-1165113IPR001005SANT/Myb domain
CDDcd001675.84E-1068107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MIRCHEVDEV KKGPWKPEED QILVNHVKRN GPRDWSSIRS KGLLNRTGKS CRLRWVNKLR  60
PDLKNGVKFS PEEERTVIDL QAQFGNKWAR IATYLTGRTD NDVKNFWSSR QKRLSRMQGT  120
SLMRPNKAPE SMEEVNSLAF CDAPPAQAMS LDSPASGTYE VAPLPELVQP ISCAYENTGF  180
HFDLFDERML ISEPQAASLS FPSCSQLQQD FLGSQDALAR LGDSCFMDAF NHFGEPMPGD  240
QIPLGQSPVD ININTRTNEV KPESSDMVLM DSFTDDFHPM DIFDEIEPLP SPSNWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-26911324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678361782
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093325.11e-90transcription factor MYB63-like
TrEMBLA0A2Z7BAP75e-89A0A2Z7BAP7_9LAMI; Uncharacterized protein
STRINGXP_009587874.12e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-68MYB family protein