PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678357649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27876.5 Da PI: 8.1909 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.3 | 6.5e-32 | 54 | 110 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +k+rYkeClkNhA+++Ggha+DGCgEf+++ ge+gt ++lkCaAC+CHRnFHR+e+e+ 678357649 54 MKWRYKECLKNHAVEIGGHALDGCGEFIAA-GEDGTLESLKCAACNCHRNFHRKEHEH 110 579**************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-21 | 52 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-29 | 56 | 108 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.1E-29 | 57 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.084 | 58 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.4E-18 | 174 | 244 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-30 | 175 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.5E-25 | 183 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MNISHRHTVE VFLKPAMEFE DQEEEQVGEV ELGLTTHDGK MPTPVNSSPP LSSMKWRYKE 60 CLKNHAVEIG GHALDGCGEF IAAGEDGTLE SLKCAACNCH RNFHRKEHEH DGFALHRHRQ 120 ILLASHNGPQ GHLGYRGPGG YFHLTPPPHQ RRVPLLALPS SSGGGPRDDM EEYYSNPSSS 180 GGKKRMRTKF SQDQKDKMLS FSDRLGWRIQ KQDEDLVQQF CHEVGIKRNV LKVWMHNNKH 240 TLGKKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 184 | 241 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678357649 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554326.1 | 3e-99 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | A2Z259 | 5e-63 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 5e-63 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q9SB61 | 4e-63 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | S8DMV2 | 3e-98 | S8DMV2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L00170.1.p | 1e-76 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-65 | homeobox protein 22 |
Publications ? help Back to Top | |||
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