PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678357494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | LBD | ||||||||
Protein Properties | Length: 167aa MW: 19276.4 Da PI: 10.3905 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.2 | 3.6e-35 | 10 | 111 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCa+Ck++r kC+++C+lapyfp++qp+kf+nvh+lFG+++++k+lk+l++++ r+da++++vyeAe+r r P+ G++ ++++l+ ql+++ + l+ +++ 678357494 10 ACASCKFQRIKCSPSCPLAPYFPSDQPEKFQNVHRLFGVAKIIKTLKNLKNKTeRDDAITAMVYEAEIRRRFPMLGCTLILRRLEDQLACATNRLQWVQS 109 7************************************************65554******************************************9998 PP DUF260 100 el 101 +l 678357494 110 QL 111 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.695 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-33 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
SPVTGGAVPA CASCKFQRIK CSPSCPLAPY FPSDQPEKFQ NVHRLFGVAK IIKTLKNLKN 60 KTERDDAITA MVYEAEIRRR FPMLGCTLIL RRLEDQLACA TNRLQWVQSQ LEMRRKKFRN 120 HDAKMAVLQR DHSKAVLVPS PRLEPPRFQP ITERTDENLD NCDQRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 1 | 105 | 2 | 101 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 1 | 105 | 2 | 101 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678357494 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A4D9C4N9 | 6e-41 | A0A4D9C4N9_SALSN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-25 | LOB domain-containing protein 27 |