PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678355752 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28575.3 Da PI: 10.0121 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.1 | 2.3e-14 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r W +eEd +l ++v +G+++W++ a+ + gR++k+c++rw++ 678355752 7 REHWRPEEDAKLRRLVGAYGTHNWNAMAESLK-GRSGKSCRLRWFNQ 52 678****************************9.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 59 | 102 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W+ Iar+++ gRt++ +k+ w+ 678355752 59 RSPFTAEEEERLLACHMVHGNR-WSMIARHFP-GRTDNAIKNQWHV 102 789*******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.002 | 2 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-12 | 6 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 7 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-25 | 9 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.44E-12 | 10 | 51 | No hit | No description |
Pfam | PF13921 | 7.7E-15 | 10 | 70 | No hit | No description |
PROSITE profile | PS51294 | 23.52 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-14 | 58 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-11 | 61 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.8E-22 | 61 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MREMSSREHW RPEEDAKLRR LVGAYGTHNW NAMAESLKGR SGKSCRLRWF NQLDPRINRS 60 PFTAEEEERL LACHMVHGNR WSMIARHFPG RTDNAIKNQW HVIMARKRRN MVRKEEQKAS 120 NICSTQEGSH HHRPATHFTI QLHDDIFYNR NVEQVYLSLP PFLPRAPVVG FPSAARMSRC 180 CRRGSADFMQ VSDAFDADAK RAGEVEFYDF FQGRREVGGT AGGAEGSKIS IPFTDFLPLG 240 NSSSYYIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-29 | 10 | 107 | 10 | 107 | B-MYB |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678355752 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022889937.1 | 2e-65 | transcription factor MYB52-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-57 | myb domain protein 52 |