PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678354322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 27061.5 Da PI: 9.691 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.9 | 3.6e-48 | 12 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLk+kv + +l+ +vi+e+++++ +Pwd+p + e+e yfF++r+ ky++g+r+nr+t+sgyWkatg dk+v+s+ ++++ 678354322 12 LPPGFRFHPTDEELVVQYLKRKVFSYPLPS-TVISEFEVCREDPWDFPGN---WEHERYFFTTREVKYSKGNRSNRSTASGYWKATGLDKQVVSTrSNHV 107 79**************************99.89***************43...56799**********************************99867778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+g+ +kg ktdW+mheyrl 678354322 108 VGMKKTLVFYRGKPRKGCKTDWIMHEYRL 136 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-56 | 5 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.939 | 12 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 13 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MERMMKNGVM RLPPGFRFHP TDEELVVQYL KRKVFSYPLP STVISEFEVC REDPWDFPGN 60 WEHERYFFTT REVKYSKGNR SNRSTASGYW KATGLDKQVV STRSNHVVGM KKTLVFYRGK 120 PRKGCKTDWI MHEYRLQNPQ SSAKVNWVLC RVFLKKKGSR NGNDERFPTQ TPAAESPVFY 180 DFMAKDVNVR PANSSSGSSD VTAISPRNEA VDHGDDSSSC CNSFIACAGS NQRPSCN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 10 | 160 | 18 | 173 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00507 | DAP | Transfer from AT5G13180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678354322 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086848.1 | 1e-110 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 8e-85 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A2G9H1C1 | 1e-102 | A0A2G9H1C1_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0001s13380.1 | 2e-92 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-87 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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