PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678352371
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31003.3 Da    PI: 7.0363
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678352371genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.9e-1893145456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++  +q+++Le++Fe ++++  e++ +LAk l+L+ rqV++WFqNrRa+ k
  678352371  93 KRRLRGDQVKALEDMFEFESKLEPETKLKLAKDLNLKPRQVSIWFQNRRARSK 145
                4578899********************************************99 PP
2HD-ZIP_I/II118.34.1e-3891183193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl  +qvk+LE++Fe e+kLepe K +la++L+l+prqv +WFqnrRAR ktkqlE+dy+ Lk+++dalk++ e+L+ke+++L +e++e
    678352371  91 EKKRRLRGDQVKALEDMFEFESKLEPETKLKLAKDLNLKPRQVSIWFQNRRARSKTKQLETDYKLLKANFDALKSNVEALKKENQSLFSEIAE 183
                  69*************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1783149IPR009057Homeodomain-like
PROSITE profilePS5007116.5287147IPR001356Homeobox domain
SMARTSM003897.1E-1590151IPR001356Homeobox domain
PfamPF000463.5E-1593145IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-1797145IPR009057Homeodomain-like
CDDcd000861.11E-1499148No hitNo description
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
CDDcd146860.00683138189No hitNo description
PfamPF021834.2E-15147187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPWIASTMGM EENSILVTLL QKTARAHSHG RSLDQTAAME NGFPTVPLLL KTAKMSTISV  60
TPSSHAGTKP ICSAKQLQGM VKGDCVDRRL EKKRRLRGDQ VKALEDMFEF ESKLEPETKL  120
KLAKDLNLKP RQVSIWFQNR RARSKTKQLE TDYKLLKANF DALKSNVEAL KKENQSLFSE  180
IAELKLKVEA NVETESSEAM ILPSDSKDVA DVKKHGSSDC SESSAAAVSR SYAADKLAET  240
DGGVSCLTET SFHFSDSGYE PEFIKIEDQN LFDTVFMW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139147RRARSKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678352371
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc11g010270.1.13e-38(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.16e-38homeobox protein 16