PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678350400
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 412aa    MW: 45903.1 Da    PI: 7.0289
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678350400genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY64.71.5e-20189245259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqKe+ gs++pr    Ct++   +C ++k+v+rs+ed+  ++++Y g+H ++
  678350400 189 EDGYTWRKYGQKEILGSKHPR----CTHKylrNCLATKQVQRSDEDGAGFDVKYIGTHSCD 245
                8*******************7....8887777**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-19183246IPR003657WRKY domain
PROSITE profilePS5081115.526183247IPR003657WRKY domain
SuperFamilySSF1182901.7E-18187246IPR003657WRKY domain
SMARTSM007741.6E-30188246IPR003657WRKY domain
PfamPF031061.1E-18189245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRRNGEGGVR KSQRSNPSRT GTGLGDCPVD RTKKLGFLVK SPVTHITFFQ DHHLFKLKTK  60
FRSRCTYTDL GSQEPSSAAS FRVSGGSMTG CHQLVAELSQ GMAKARELRR LLNETAVEEE  120
DQVFLLQMII SSFEKALGVL KAPASSPSAY ESKGARRYAR DGNGSKKRKL ESTWTREMRV  180
DSGSEGPAED GYTWRKYGQK EILGSKHPRC THKYLRNCLA TKQVQRSDED GAGFDVKYIG  240
THSCDTVPNP TEPSFEKRSS SLFYHQGEYQ NDVLQSMKTN LKVETDMEET AADSFFTGFA  300
RNEQENYCSP ISAFFDETGS FCSSTTLADD GRMSVYSSPA FQSPATSRTN YFCDTSYHTG  360
EYKKVQLPAE TQVPETASGH VPTTISPSEG MDEAILDPRF TMDISEILEY LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-16189244968OsWRKY45
Cis-element ? help Back to Top
SourceLink
PlantRegMap678350400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-32WRKY family protein