PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678348948
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 627aa    MW: 69767.7 Da    PI: 9.9406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678348948genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.8e-082169346
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +W t+E++ll+ av ++G+  W+++a++++      g t+ +c++++++
        678348948 21 SWGTWEELLLAFAVDRYGTAAWDSVANELQrrtskRGVTAQNCRLKYLD 69
                     7*****************************8888888888999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.5E-72070IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-42155IPR009057Homeodomain-like
CDDcd001670.003762171No hitNo description
SMARTSM002976.5E-12275384IPR001487Bromodomain
Gene3DG3DSA:1.20.920.106.8E-13277389IPR001487Bromodomain
SuperFamilySSF473709.03E-14277385IPR001487Bromodomain
PfamPF004395.5E-7291369IPR001487Bromodomain
PROSITE profilePS5001410.581294365IPR001487Bromodomain
CDDcd043696.89E-12296379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MTEPGGDVSP ERQGGGASTP SWGTWEELLL AFAVDRYGTA AWDSVANELQ RRTSKRGVTA  60
QNCRLKYLDI KRRFDAEETV RLLEQLRKLR VAELRREVQR HDLNIESLEL KVKMMEAERE  120
RSLRGEISTS DKEKENREKE SGPPERVIGE GLEKERLSAH ESNSTDDIST EMKSGGDDDS  180
TCRKVADRKL VLEESCNGST NSRQEPEQPK REPFSGSGEV DFQGGSCDLP EAGTKEDSDV  240
QSSAGKSRKG VGNDKAATRR SSIMAEHEHE GQSSAIKYSS AQSQPLMALL CTLRAHKLSA  300
VFQRRLLSQE SSIYEKTVLE HVDFDTVEER MKGGLYSSSP AKFFRDLLLL VNNAIVFYPG  360
DSMEANAAME IRVMVRKEIS QRHSKSDASL VKAASLESHL APKMEEGELF NLLKPGICRK  420
RSSIKAKASP VVDERREEKP RMPFAMLEEP KITKKRSRER IPTVSSNLKP EDPEVIDNKA  480
SLEPRKQRSK GVVSSSADHG GETKVVDVNK AKKRGTAIFL NRMSNSSTPS SNGLLVDAMR  540
NTPLSSGSTL CKRGEKKQQH STRRSSETRE MKAKVAAPSP VKRSVGRPPK RTPPPHPPLV  600
SKEGWETGEP DSTSLSTVQK KKRSRKM
Cis-element ? help Back to Top
SourceLink
PlantRegMap678348948
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078831.11e-145DNA ligase 1 isoform X1
TrEMBLA0A2G9FZQ11e-145A0A2G9FZQ1_9LAMI; Uncharacterized protein
STRINGMigut.K00040.1.p1e-120(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-62DNA-binding bromodomain-containing protein