PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678346564
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 826aa    MW: 91626.2 Da    PI: 6.3156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678346564genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.8e-2089144156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR++ k
  678346564  89 KKRYHRHTPRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQLK 144
                688999**********************************************9877 PP
2START145.74.5e-463285532206
                HHHHHHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
      START   2 laeeaaqelvkkalaeepgWvkss.........esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                la +  +elvk+ +++ep+W +s+         e+ n++ + +  +++++  +++ea + ++vv+m++ +lv  +ld + qW e ++    +a+tl+v+ 
  678346564 328 LAVSSINELVKMCSVGEPLWIRSPdsgslvlnvEEYNRMFSWSPNAKQQSgkFRIEATKGTAVVIMNSITLVDAFLDAN-QWMELFPsivsRAKTLQVVH 426
                678899******************88886666555555555555555555999**************************.******************** PP

                TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
      START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                s       g l+lm+aelqal+plvp R+  f+Ry++   ++g+wvivd   d  q+    s ++ +  + pSg++i++++ng+s+vtw+ehv+++++ +
  678346564 427 SEasdhssGSLHLMYAELQALTPLVPtREAHFLRYCQHnAQEGTWVIVDFPMDGFQSSYPpSFPYYK--RKPSGCIIQDMPNGYSTVTWIEHVEVEDSPV 524
                *99***********************************999********999965554421566665..9****************************** PP

                HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 178 hwllrslvksglaegaktwvatlqrqcek 206
                h+++  +v+sg+a+ga++w+a lq+qce+
  678346564 525 HQVFAGFVRSGMAFGARRWLAVLQSQCER 553
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.3E-1973147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-2175140IPR009057Homeodomain-like
PROSITE profilePS5007116.8686146IPR001356Homeobox domain
SMARTSM003898.0E-1987150IPR001356Homeobox domain
CDDcd000861.76E-1889147No hitNo description
PfamPF000461.1E-1789144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PROSITE profilePS5084842.687318556IPR002913START domain
SuperFamilySSF559611.13E-31319555No hitNo description
CDDcd088755.96E-113322552No hitNo description
SMARTSM002341.0E-30327553IPR002913START domain
PfamPF018524.5E-38328553IPR002913START domain
SuperFamilySSF559617.14E-11591803No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MYGDCQVLST MGGNAMAIST ENSLLQNQNF GFMSAINPFN IFAPMVPKEE NGVGKNKEEM  60
LESGSGSEHI EGASGNDQEA EQQQPPAKKK RYHRHTPRQI QEMEALFKEC PHPDDKQRLK  120
LSQDLGLKPR QVKFWFQNRR TQLKAQQDRQ ENVVLRAENE GLRNENYRLQ ASLRNVVCPS  180
CGGAAMLGEM GFDEHQLRIE NARLKEEVCA SSLSTQKKFV NSVCIFESAF FSMIILMDLL  240
LSFTQYERVC CLISQYAGHS TPRPGPGPLI GAPSLELDMS PFPRKFEQDN MTGCPSDHMI  300
PLPFVPESSH FAPTPLIMDE EKSLALELAV SSINELVKMC SVGEPLWIRS PDSGSLVLNV  360
EEYNRMFSWS PNAKQQSGKF RIEATKGTAV VIMNSITLVD AFLDANQWME LFPSIVSRAK  420
TLQVVHSEAS DHSSGSLHLM YAELQALTPL VPTREAHFLR YCQHNAQEGT WVIVDFPMDG  480
FQSSYPPSFP YYKRKPSGCI IQDMPNGYST VTWIEHVEVE DSPVHQVFAG FVRSGMAFGA  540
RRWLAVLQSQ CERLASLMAR NVSDLGAFQA EGRKCLMNLA KRMTRTFCLN MSNCYGQSWT  600
ALSDSADETI RITTRKVAEP GQPNCLILSA VSTSCLPYRH DHVFNFLRDE RSRAQIEVLS  660
NGNSLQEIAH IANGSNPGNC ISLLRTNVAS NSSQSVEFLL QESSVDDSGS MVIYATIDVE  720
AIQRVMNGQN QSSILLLPLG FIIHPINQTT NAEEGMKKNA SDTGCLLTIG LQVLANTSAT  780
GKLNLSSVTA VNHHLCNIMQ QINSLLRRGN CRAGDAGEGP PPSSML
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678346564
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070329.10.0homeobox-leucine zipper protein HDG5 isoform X2
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2G9HN190.0A0A2G9HN19_9LAMI; Transcription factor, contains HOX domain
STRINGMigut.E00753.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]