PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345889
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 599aa    MW: 69529.6 Da    PI: 5.3977
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345889genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012564585122
                EEETTTTEEESSHHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                ++C++C + F ++  L++H+  
  678345889 564 HRCEKCEEQFESRNKLHKHLAE 585
                79*****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.11E-221106IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1109.6E-23177IPR001623DnaJ domain
SMARTSM002716.9E-21466IPR001623DnaJ domain
PROSITE profilePS5007619.323574IPR001623DnaJ domain
CDDcd062571.55E-15563IPR001623DnaJ domain
PfamPF002262.0E-20671IPR001623DnaJ domain
PRINTSPR006256.9E-15725IPR001623DnaJ domain
PRINTSPR006256.9E-152540IPR001623DnaJ domain
PRINTSPR006256.9E-154666IPR001623DnaJ domain
PROSITE patternPS0063605170IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.69E-13298344No hitNo description
SMARTSM004515.1E-5304338IPR003604Zinc finger, U1-type
SMARTSM003552.1307331IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-10307332IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280309331IPR007087Zinc finger, C2H2
PfamPF127560.0011563596IPR015880Zinc finger, C2H2-like
SMARTSM003551.1564588IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349564593IPR007087Zinc finger, C2H2
PROSITE patternPS000280566588IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAKRCLYEVL GVDRDSSADE IRTAYRRLAL RRHPDKLVQS GVPEAEATAA FQELVNAYEV  60
LSDPRERAWY DSNRNQILFS SNSAASGSSP QVPDLFPFFS NSVFSGYSDS GRGFYKVYGD  120
IFEKIYANER NFAKKFGVSD PREAPVIGNS ESPYVQASVI ANALGFVIDY TTPLEKVTAF  180
YNYWSAFTTV LEFFWVDEVA VMPNRKSRRL LEDHNKKLRK AERKKYNDIV RQLSEFVKKR  240
DIRVRDMQLK KNEEMMKKRE IEKQKMKELE RQKAEKARNY EEPDWSKVED VEEDEMEDVS  300
QEKRQEFYCV ICSKRFKSDK QWKNHEQSKK HKEKLRELQE AFDEEDNDYD TRDVEEEREG  360
DGDAVSHLSG DDRLNELTEQ FEHGVGIKDD RDDKDVEWCS AHESEMSETP LDPGLDEDES  420
STFEAMAFAH RNTNNFENQQ NGFASELAVE KSEDEQESMR YKNVRHHKNG RCRRRGKGKH  480
EKEVESGEAD AAVRDKEDEE EAIDNAEAAE CDQFPTEHAK DESTNLFHKR ETKTVKNARK  540
KGSSSKLADP SKERKKSGAD SSEHRCEKCE EQFESRNKLH KHLAETGHAS VKYKRSSKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5nro_B2e-12171167Chaperone protein DnaJ
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345889
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087346.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-121JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2G9H5330.0A0A2G9H533_9LAMI; Molecular chaperone (DnaJ superfamily)
STRINGMigut.D01668.1.p1e-172(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-120DNAJ heat shock N-terminal domain-containing protein