PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345068
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 303aa    MW: 33766.2 Da    PI: 7.3185
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345068genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++++ G g+W++ ++  g+ R++k+c++rw +yl
        678345068 14 KGPWTPEEDERLVEYINKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.12.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++l v+++  lG++ W++Ia+ ++ gRt++++k+ w+++l
        678345068  67 RGPFSSEEEKLVVQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.055965IPR017930Myb domain
SuperFamilySSF466892.06E-3011108IPR009057Homeodomain-like
SMARTSM007175.0E-141363IPR001005SANT/Myb domain
PfamPF002498.0E-171461IPR001005SANT/Myb domain
CDDcd001671.13E-101661No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2565117IPR009057Homeodomain-like
SMARTSM007171.0E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129419.28766116IPR017930Myb domain
PfamPF002498.8E-1467112IPR001005SANT/Myb domain
CDDcd001671.23E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWTPE EDERLVEYIN KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF SSEEEKLVVQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLVLMG  120
IDPQTHEPLA VTAAAGNRPC SSPSTRHMAQ WESARLEAEA RLSRESLLFI PMSTEKPQTD  180
YFLRLWNSEV GETFRKLSSK NQVQKASASQ ASKCGSLSET TTEAVPGVVV KDENFNEGRG  240
NEFSNVYNNE DESCVSSGLE EDSSESSLQL LLDFPSQNDM MTCSRKICGI CLSFALIEAI  300
GES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091956.11e-136myb-related protein Zm38 isoform X2
SwissprotQ9M2D91e-125MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2G9G4X21e-135A0A2G9G4X2_9LAMI; Transcription factor, Myb superfamily
STRINGSolyc01g094360.2.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-117myb domain protein 17