PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678339498

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 275aa MW: 31760.4 Da PI: 8.6703

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678339498	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.5e-50	10	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...........................kvkaeekewyfFskrdkkyatgkr 73 lppGfrFhPtdeel+ +yL++++ +k++++ +vi+evdiyk++PwdLp k + +e+ewyfF++rd+ky++g r 678339498 10 LPPGFRFHPTDEELIIHYLRNQAVSKPCPA-SVIPEVDIYKFDPWDLPGwcpfltlsssfmlilmvascvvfwmigKSEFGESEWYFFTPRDRKYPNGVR 108 79**************************.99***********6689********9999999987765566899************* PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr++ sgyWkatg+dk+++s +++ vg+kk Lvfykg+ pkg ktdW+mheyrl 678339498 109 PNRSAVSGYWKATGTDKSIYS-GSKCVGIKKALVFYKGKPPKGIKTDWIMHEYRL 162 *****************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-21	6	59	IPR003441	NAC domain
PROSITE profile	PS51005	56.542	10	189	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	11	162	IPR003441	NAC domain
SuperFamily	SSF101941	3.14E-38	84	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MEKHTNPSTL PPGFRFHPTD EELIIHYLRN QAVSKPCPAS VIPEVDIYKF DPWDLPGWCP 60 FLTLSSSFML ILMVASCVVF WMIGKSEFGE SEWYFFTPRD RKYPNGVRPN RSAVSGYWKA 120 TGTDKSIYSG SKCVGIKKAL VFYKGKPPKG IKTDWIMHEY RLSDARPRPS MQNGSMRLDD 180 WVLCRIKKKN VARELEHESP HDPIPQLALD DSSKFPRNFS LTNLWEFGYM GSLPHLLNEP 240 YLHQETSASY RSFSPVDQKF LAQPPIEDAF MHSFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-64	3	194	7	170	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-64	3	194	7	170	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-64	3	194	7	170	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-64	3	194	7	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-64	3	194	10	173	NAC domain-containing protein 19
3swm_B	4e-64	3	194	10	173	NAC domain-containing protein 19
3swm_C	4e-64	3	194	10	173	NAC domain-containing protein 19
3swm_D	4e-64	3	194	10	173	NAC domain-containing protein 19
3swp_A	4e-64	3	194	10	173	NAC domain-containing protein 19
3swp_B	4e-64	3	194	10	173	NAC domain-containing protein 19
3swp_C	4e-64	3	194	10	173	NAC domain-containing protein 19
3swp_D	4e-64	3	194	10	173	NAC domain-containing protein 19
4dul_A	5e-64	3	194	7	170	NAC domain-containing protein 19
4dul_B	5e-64	3	194	7	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678339498

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022878302.1	1e-108	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-99	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A2G9FYW3	1e-102	A0A2G9FYW3_9LAMI; Uncharacterized protein
TrEMBL	R4N7L5	1e-102	R4N7L5_JATCU; NAC transcription factor 027
STRING	cassava4.1_013467m	1e-101	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	3e-98	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]