PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678339056

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 329aa MW: 35261.1 Da PI: 8.5303

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678339056	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.2	2.1e-40	48	139	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...k 89 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s ++s+s+ s++ + 678339056 48 PPKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISVRNSGSTLSAPshfR 139 789******************************************************************99976666666666555443321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-38	53	147	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.636	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDGNSMQRSH FSLRLLEQKD DDHLEQGNGS NFSLSKSSSS QQPSKKPPPK RSSTKDRHTK 60 VDGRGRRIRM PATCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS 120 LNISVRNSGS TLSAPSHFRQ NSGSYLSSPG FGNTQFRNLN HLDDSLQRLD FLSGNLSLSP 180 MLQSKQELGE GEITLGRRRE DLAHEMGSYM LGPIFGSHLN NIQSPSAAFV MVTNPSTQTT 240 LSGGSGGGES MLPFPSTVAS SSMYRQPPAS SSGLHLMNFP PAMSIFRQHH GSETVADGGH 300 LGMLSALNTF KANRGSEAPA TSSDGGADD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678339056

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071008.1	3e-94	transcription factor TCP15
TrEMBL	A0A4D8ZF88	3e-85	A0A4D8ZF88_SALSN; Uncharacterized protein
STRING	Gorai.008G181600.1	5e-80	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-47	TCP family protein