PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678337921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27287.4 Da PI: 4.8761 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.6 | 1.7e-21 | 55 | 108 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ +++ +LAkklgL+ rqV vWFqNrRa++k 678337921 55 KKRRLTPEQVQLLEKSFEEENKLEPDRKSDLAKKLGLPPRQVAVWFQNRRARWK 108 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.5 | 4.9e-40 | 54 | 145 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFeee+kLep+rK++la++Lgl prqvavWFqnrRAR+k+kqlEkd+++Lk++y +l++ e++ +e+ +L+++l 678337921 54 EKKRRLTPEQVQLLEKSFEEENKLEPDRKSDLAKKLGLPPRQVAVWFQNRRARWKAKQLEKDFHQLKSSYGSLVSIFESVLHENLDLKSQLL 145 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-20 | 49 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-21 | 53 | 114 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.2E-19 | 55 | 108 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-19 | 55 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 56 | 117 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.1E-6 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.1E-6 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-11 | 110 | 150 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MESWRMPFGT SSSFMGNGDL LFLGAGSLMG VEETRKRGQF MLHDEDYFDD QSPEKKRRLT 60 PEQVQLLEKS FEEENKLEPD RKSDLAKKLG LPPRQVAVWF QNRRARWKAK QLEKDFHQLK 120 SSYGSLVSIF ESVLHENLDL KSQLLSLRQM SEAKEAESDA LRKQSGESLP KEATLSAHVT 180 ARGGGAVADE DSRQPGSYIP DNHFPSCTAD VYCLNSEEDD GYRSDISTVF GSAEELGSLI 240 WS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | RRARWKAKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678337921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007031433.2 | 7e-70 | PREDICTED: homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A2G9GBN2 | 6e-73 | A0A2G9GBN2_9LAMI; Transcription factor HEX | ||||
STRING | EOY02359 | 1e-69 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 9e-49 | homeobox 1 |