PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678334627 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | NAC | ||||||||
Protein Properties | Length: 225aa MW: 25712.9 Da PI: 8.4281 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.5 | 1.1e-39 | 7 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p+GfrF P++eel+++yL++k+ g+ +++++i+ ++iy+++P dLp ++ + ++w+fF++ + k+a++ r+nr t +gyWkatg++ +v s++++ 678334627 7 PVGFRFYPNEEELLSFYLHRKIYGNCpPSIDSIIPLLHIYDYDPPDLPrNHSPLGGEQWFFFVPMRGKEARNGRTNRLTPQGYWKATGTQSDVNSSQHQI 106 89********************99984556667999************555566999******************************************* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g k+t+vfy grap+g+kt W m+ey++ 678334627 107 IGRKRTMVFYAGRAPTGRKTPWKMNEYKA 135 ***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-45 | 4 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.523 | 6 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-22 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSANDCPVGF RFYPNEEELL SFYLHRKIYG NCPPSIDSII PLLHIYDYDP PDLPRNHSPL 60 GGEQWFFFVP MRGKEARNGR TNRLTPQGYW KATGTQSDVN SSQHQIIGRK RTMVFYAGRA 120 PTGRKTPWKM NEYKAVETPS SLPTSQVREE LSLCRIYNRP SSGRAFQRRT LRGLEAAEYQ 180 QRVEPAVEKP SNGEPKDAEA EAENMAANGF ASWDLESIWM NLGYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 1 | 164 | 15 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678334627 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553649.1 | 1e-66 | NAC domain-containing protein 90-like isoform X2 | ||||
TrEMBL | A0A2G9GF60 | 2e-64 | A0A2G9GF60_9LAMI; Uncharacterized protein | ||||
STRING | Solyc11g068620.1.1 | 3e-56 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2494 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-56 | NAC domain containing protein 90 |