PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678334563 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 208aa MW: 22281.3 Da PI: 8.9327 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.4 | 1.5e-35 | 44 | 115 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasece 74 +k ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl+ a+++i+++tgt+s ++++++ 678334563 44 TKSSTTKDRHTKVNGRGRRVRMPALCAARVFQLTRELGHRSDGETIEWLLKHAEKSIIAATGTGSLPSEAVS 115 57889**********************************************************888884441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.4E-31 | 48 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.955 | 49 | 103 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTSSDIFVQI AGPDVPPPPS SGHDVGPANS RPKLAVSRKT TRGTKSSTTK DRHTKVNGRG 60 RRVRMPALCA ARVFQLTREL GHRSDGETIE WLLKHAEKSI IAATGTGSLP SEAVSTSSTL 120 PPSSPVLSVH APVSMPLMQI ALHSVTPIHG IGGNSFELPH TDPSCRLDLC HHHSPPSHVH 180 PEFLGYRQIP FTALLLQPAT AEEEVDGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678334563 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020553454.1 | 2e-61 | transcription factor TCP11-like | ||||
TrEMBL | A0A2G9FXY7 | 2e-58 | A0A2G9FXY7_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055541 | 1e-53 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 6e-30 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |