PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678333437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | SRS | ||||||||
Protein Properties | Length: 196aa MW: 22068.9 Da PI: 9.3376 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 133 | 3.1e-41 | 74 | 192 | 4 | 150 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 ++++CqdCGnqakkdC+h+RCRtCC++rgf+C thvkstWvpaakrrer++ql+ + + + rkr+ +++e e 678333437 74 TKINCQDCGNQAKKDCVHMRCRTCCRNRGFQCPTHVKSTWVPAAKRRERHEQLQRRDPTP------EVATRKRQR----------------ANPSEPENG 151 6789*********************************************88887643322......222222221................223344567 PP DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 ++P+ev ++a fr+vrv+ +e+aY+++v igGhvfkG++++q 678333437 152 RFPSEVTATAAFRSVRVR------DEYAYEAVVRIGGHVFKGTIFHQ 192 8***************96......8*****************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.4E-41 | 75 | 192 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.4E-26 | 77 | 119 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.1E-12 | 152 | 192 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MAAGFFALGG VGDVAGGGAA MAPEMNLESW LLYRNEANDL PYKGFEPWGR QPMGVSFDRR 60 QSPVLEPYKL GDETKINCQD CGNQAKKDCV HMRCRTCCRN RGFQCPTHVK STWVPAAKRR 120 ERHEQLQRRD PTPEVATRKR QRANPSEPEN GRFPSEVTAT AAFRSVRVRD EYAYEAVVRI 180 GGHVFKGTIF HQHTAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678333437 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016571710.1 | 3e-48 | PREDICTED: protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | K4B6C9 | 2e-40 | EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1 | ||||
TrEMBL | A0A2G2ZMH9 | 2e-47 | A0A2G2ZMH9_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2P5VYP1 | 2e-47 | A0A2P5VYP1_GOSBA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-42 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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