PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333334
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 823aa    MW: 90915.9 Da    PI: 6.6811
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333334genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-182682557
               SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  678333334 26 ARYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIESKQIKVWFQNRRCREKQ 82
               689****************************************************97 PP
2START1411.2e-441633662200
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +ae +++e+++ka+ ++  Wv+++ +++g+ ++ +f+ s+ + g a+ra+ +v  ++++ ve+l d++  W +++++ ++      g  g+++l +++++
  678333334 163 IAEGTLAEFLSKATGTAVDWVQMPGMKPGPGSVGIFAISQHCGGVAARACSLVSLEPTKIVEILKDRP-SWYRDCRSLDVFTMFPAGngGTIELLYMQTY 261
                6788999***************************************************9999999999.**********9999999999*********** PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++lvp  df+++Ry+ +l  g++v++++S++     p+    s+++Rae+lpSg+li+p+++g+s +++v+h +l+++ ++++lr+l++s+ + ++k+
  678333334 262 APTTLVPaHDFWTLRYTTTLDNGSLVVCERSLSGSGAAPNgaaASQFIRAEMLPSGYLIRPCDGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKFLAQKM 361
                *********************************88887777999*******************************************************9 PP

                HHHHT CS
      START 196 wvatl 200
                + a  
  678333334 362 TIAIA 366
                98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861983IPR001356Homeobox domain
SMARTSM003894.2E-132187IPR001356Homeobox domain
SuperFamilySSF466892.05E-152485IPR009057Homeodomain-like
CDDcd000865.40E-152484No hitNo description
PfamPF000461.1E-152682IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-182782IPR009057Homeodomain-like
CDDcd146862.75E-576115No hitNo description
PROSITE profilePS5084823.648153354IPR002913START domain
SMARTSM002344.4E-32162372IPR002913START domain
SuperFamilySSF559614.94E-30162351No hitNo description
PfamPF018524.3E-42163367IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-17167346IPR023393START-like domain
PfamPF086704.4E-47679821IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MAMVAQQRRD GSSRSIDKNM EAGKYARYTA EQVEALERVY AECPKPSSLR RQQLIRECPI  60
LANIESKQIK VWFQNRRCRE KQRKESGRLQ TVNRKLSAMN KLLMEENDRL QKQVSQLVSE  120
NGHMRQQLHT ASGPAGDASC ESAVTTPQRS IRDASNPAGL LSIAEGTLAE FLSKATGTAV  180
DWVQMPGMKP GPGSVGIFAI SQHCGGVAAR ACSLVSLEPT KIVEILKDRP SWYRDCRSLD  240
VFTMFPAGNG GTIELLYMQT YAPTTLVPAH DFWTLRYTTT LDNGSLVVCE RSLSGSGAAP  300
NGAAASQFIR AEMLPSGYLI RPCDGGGSII HIVDHLNLEA WNVPEVLRPL YESSKFLAQK  360
MTIAIAHDLS GEIVHTISRQ PAVLRTFSHR LSRGFNDAVN GFNDDGWSLL TCADTEDVVL  420
AIGPMKNLSA TQRRISLVGS VLCAKASMLL QNVPPAMLVR FLREHRSEWA DFSIDAYVAS  480
ALKNTYAYPG MRQTRFTGSH IAMQLGHTME HEEMLEVVRL EGQLVSHEDA FVSRDIHLLQ  540
MCSGIDEDGV GACAELIFAP IDEMFPDDVH LLPSGFRIIP LHKKSDLFVP DETFDSASRL  600
KAGLTMSSNS TSPSNRCSSR SVLTIAFQFP FESSLQENVA TMARQYVRSV ISSVQRVAMA  660
ISPAATRTKL CLASPEDETL AHWVCQSYSY HIGAELLKPE SESSDAVLKA LWQHPDAILC  720
CSLKAAPVYK FANQSGLDLL ETTLASLQDI KIDKIFDDLG RKALFSEFPT IMQQGFANLP  780
GGICISTMGR HASYEHALVW KVFTEEENEV HCLAFSFVNW CFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678333334
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089294.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2G9HC040.0A0A2G9HC04_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]