PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678333077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 127aa MW: 15135.2 Da PI: 9.552 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39 | 1.3e-12 | 12 | 41 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++++eLA+ l+L rqV vWFqNrRa+ k 678333077 12 QRQKQELARDLKLRPRQVEVWFQNRRARTK 41 6799************************98 PP | |||||||
2 | HD-ZIP_I/II | 82.9 | 4.8e-27 | 11 | 74 | 25 | 88 |
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ++++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+ ye+Lk+ + +l+een+ L+ke + Lr 678333077 11 DQRQKQELARDLKLRPRQVEVWFQNRRARTKLKQTETHYEYLKQYCATLTEENRWLHKELQILR 74 5789********************************************************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 12.795 | 1 | 43 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.31E-7 | 11 | 44 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 11 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.56E-11 | 11 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.6E-10 | 12 | 41 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 18 | 41 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.5E-11 | 43 | 86 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MKGIEVRGFS DQRQKQELAR DLKLRPRQVE VWFQNRRART KLKQTETHYE YLKQYCATLT 60 EENRWLHKEL QILRMPQQQQ QPVYMCPCCQ RIAFAPKDKD NDGDQPGDPA NATTLFNIPL 120 KHPQHSN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 35 | 43 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678333077 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022884327.1 | 2e-30 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | A2YW03 | 3e-26 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | S8BXA1 | 1e-30 | S8BXA1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Lus10021064 | 1e-29 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-25 | HD-ZIP family protein |