PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678331489

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 301aa MW: 34974 Da PI: 6.5172

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678331489	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.6	3e-54	19	148	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 lppGfrFhPtd e+++eyL kk++++++++ +i e+d++k+ePwdL++k k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgkdke++++ ++ 678331489 19 LPPGFRFHPTDTEIIMEYLLKKAADRRFDA-IAIGEADLNKCEPWDLHSKSKLGEKEWFFFFQRDRKYPTGMRTNRATESGYWKATGKDKEIYKEkaRRF 117 79*************************9.88**********9888999************************************844455 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkgektdWvmheyrle 678331489 118 LVGMKKTLVFYKGRAPKGEKTDWVMHEYRLE 148 5**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-60	15	170	IPR003441	NAC domain
PROSITE profile	PS51005	56.722	19	169	IPR003441	NAC domain
Pfam	PF02365	4.9E-27	20	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MFAAGTSMDL QDEFDAAQLP PGFRFHPTDT EIIMEYLLKK AADRRFDAIA IGEADLNKCE 60 PWDLHSKSKL GEKEWFFFFQ RDRKYPTGMR TNRATESGYW KATGKDKEIY KEKARRFLVG 120 MKKTLVFYKG RAPKGEKTDW VMHEYRLEGD IFPRNATREE WVVCKVFHKN TACRRNPEVG 180 ASSLPQSDDY NEEDDHKGKF ILPQKGHFQN PISSWSSPYS PHATTMFYSH NTVHHQQFMD 240 PLYSMQNPAF SPSEETGVSN ESSMYYSRRE NEESKGGFAQ QLNDITPSPI DISDLDSFWS 300 Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-53	5	175	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-53	5	175	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-53	5	175	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-53	5	175	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	6e-53	5	175	1	171	NAC domain-containing protein 19
4dul_B	6e-53	5	175	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678331489

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078584.1	1e-94	NAC domain-containing protein 92
Swissprot	Q9FK44	3e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A218WKY0	5e-82	A0A218WKY0_PUNGR; Uncharacterized protein
TrEMBL	S8CVQ4	3e-82	S8CVQ4_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010276452.1	1e-80	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	9e-82	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]