PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678329120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20637.7 Da PI: 4.7657 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 63 | 7.6e-20 | 4 | 60 | 1 | 56 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeered 56 +CaaC+vlrr+Ca++C lapyfp ++p +fa +h++FGasn++k l+ ++ +d 678329120 4 PCAACRVLRRRCADNCLLAPYFPLSDPLRFATAHRVFGASNIIKNLQCSgMPTMEHD 60 7********************************************998633333555 PP | |||||||
2 | DUF260 | 59.8 | 7.9e-19 | 68 | 126 | 43 | 101 |
DUF260 43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 l+ l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la+++++l 678329120 68 LQCLQELPESQRADAVSSIVYEANARLRDPVYGSAGAIFQLQRQVSELQAQLAKAQAQL 126 5789***************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.346 | 3 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-18 | 4 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-16 | 69 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:1.20.58.60 | 9.3E-5 | 78 | 139 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence Send to blast |
MVYPCAACRV LRRRCADNCL LAPYFPLSDP LRFATAHRVF GASNIIKNLQ CSGMPTMEHD 60 LMTCGIKLQC LQELPESQRA DAVSSIVYEA NARLRDPVYG SAGAIFQLQR QVSELQAQLA 120 KAQAQLDKLQ GEKDSLQAMI WGETVSPLIN FNTFDDISYC VMEYFNSGSC SLDENGIGVF 180 PLEQTI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-33 | 4 | 126 | 11 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-33 | 4 | 126 | 11 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678329120 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019227600.1 | 2e-55 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 7e-51 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A314KQ10 | 5e-54 | A0A314KQ10_NICAT; Lob domain-containing protein 1 | ||||
STRING | ERN04956 | 9e-54 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28500.1 | 9e-34 | LOB domain-containing protein 11 |