PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678328561
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 579aa    MW: 64041.9 Da    PI: 5.8003
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678328561genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.7e-52101372128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                p+G+rF+Ptdeelv++yL+ k++g++ e+ ++i+e+d++k ePwdLp+   ++++++ew+fF+++d+ky++g+r nrat++gyWkatgkd++++skkg +
  678328561  10 PVGYRFRPTDEELVNHYLRLKIRGHESEV-SAIREIDVCKQEPWDLPAlsVLESTDNEWFFFCPKDRKYQNGQRLNRATERGYWKATGKDRNIVSKKGLK 108
                89************************999.88***************4447778999******************************************* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g+kktLvfy+grap+g++t+W++heyr+
  678328561 109 IGMKKTLVFYTGRAPDGKRTHWIIHEYRA 137
                ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-574160IPR003441NAC domain
PROSITE profilePS5100554.7959160IPR003441NAC domain
PfamPF023651.8E-2610136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAVLPSKGYP VGYRFRPTDE ELVNHYLRLK IRGHESEVSA IREIDVCKQE PWDLPALSVL  60
ESTDNEWFFF CPKDRKYQNG QRLNRATERG YWKATGKDRN IVSKKGLKIG MKKTLVFYTG  120
RAPDGKRTHW IIHEYRATDK SLDGSQPGQG AFVLCRLFKK TELKQDDTTE ITNFTEGEEI  180
VSSAVPVKYS AVEEHSESVT HIFSAPAATH PHSVGSGNNS SCEKTVYDDL ATDIQSKSCN  240
TDEVEGCATV PLIEQPYTDL DSFLEDWNIF SPLHSQMQSE LGSSLLYGGF TGDVSNGCYT  300
NDADLTNFLN SVIIDPEPQI FDGMYFSSSA GPKNTNTVLP DSYSCAESDS EVSQKQIEQG  360
HLVSDVVGES IKHESCFQTE FTAQTADFGQ CAATFHASDG YDPKKLQFSN TYNQMAPQVS  420
VANNFAAVES MPISGIKIRS RNSFSQPKSG SPAMQGTAPR RIRLVKKFQV GPMECAFPKK  480
LISNNSSHEE AGSTEEAKPA LSKLNTLPSE ETEAQKLKSN TTLTSRNDTP AIKFEDVRPS  540
LTLYPTKPSM FSCPTMRRVV MALSLILGLV ATVCATLLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-421016021168NAC domain-containing protein 19
3swm_B3e-421016021168NAC domain-containing protein 19
3swm_C3e-421016021168NAC domain-containing protein 19
3swm_D3e-421016021168NAC domain-containing protein 19
3swp_A3e-421016021168NAC domain-containing protein 19
3swp_B3e-421016021168NAC domain-containing protein 19
3swp_C3e-421016021168NAC domain-containing protein 19
3swp_D3e-421016021168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678328561
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.11e-177NAC domain-containing protein 62
TrEMBLA0A2G9G0M41e-169A0A2G9G0M4_9LAMI; Uncharacterized protein
STRINGMigut.F00136.1.p1e-158(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-83NAC transcription factor-like 9