PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678326083 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TALE | ||||||||
Protein Properties | Length: 388aa MW: 43603.3 Da PI: 6.3101 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 9e-08 | 324 | 357 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + 678326083 324 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 357 569*****************************87 PP | |||||||
2 | ELK | 29.4 | 1.8e-10 | 278 | 299 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ 678326083 278 ELKHELKQGYKDKIVDIREEIL 299 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.6E-20 | 112 | 156 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.5E-17 | 114 | 155 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.8E-25 | 165 | 221 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.0E-17 | 171 | 220 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 278 | 298 | IPR005539 | ELK domain |
SMART | SM01188 | 5.1E-4 | 278 | 299 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.3E-5 | 278 | 299 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.677 | 298 | 361 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 300 | 364 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.5E-11 | 300 | 365 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.74E-12 | 301 | 360 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 305 | 362 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.5E-18 | 318 | 357 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MAFQDHHHLP REMPIHYAAD PSTAQPSVFR SMIPDHRHSP DDKQQQPTTT TAWLNNAAVL 60 HHQWLPTTQS QPSPNSNSPR DKPDHQLHDA GPGPGGDADN SSGGGGTNWE REKCKADILN 120 HPLYEELLSA HVACLRIATP VDQLPRIDAQ LAQSQQVVAK YSVFGHGQPP LDEKDLDHFM 180 THYVLLLSSF KEQLQQHVRV HAMEAVMACW ELEQSLQSLT GVAPGEGSGA TMSDDDEDQA 240 DSDTNLFDES FDGSDSMGFG PLVPTESERS LMERVRQELK HELKQGYKDK IVDIREEILR 300 KRRAGKLPGD TTSVLKAWWQ AHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH 360 SNPSSSSSQK SKRKSGEGGK TSANEHYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 301 | 365 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678326083 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011084049.1 | 0.0 | homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | O22300 | 1e-168 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | A0A2G9HS05 | 0.0 | A0A2G9HS05_9LAMI; Transcription factor MEIS1 | ||||
STRING | Migut.K00376.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 1e-149 | KNOTTED1-like homeobox gene 4 |